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Pull requests: galaxyproject/tools-iuc

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Pull requests list

Upgrade samtools dependencies
#7068 opened Jun 20, 2025 by bwlang Loading…
3 of 5 tasks
2
New tool: PhyloPhlAn an integrated pipeline for phylogenetic profiling of genomes and metagenomes
#7067 opened Jun 19, 2025 by neo417 • Draft
3 of 5 tasks
Update artic to latest version 1.7.3
#7066 opened Jun 19, 2025 by ammaraziz Loading…
3 of 5 tasks
2
Add tesseract an OCR tool
#7064 opened Jun 18, 2025 by RZ9082 Loading…
3 of 5 tasks
14
New tool addition: UCSC mafFilter tool
#7063 opened Jun 18, 2025 by SaimMomin12 Loading…
3 of 5 tasks
kraken2: fix linter and remove unpaired paired input
#7062 opened Jun 17, 2025 by bernt-matthias • Draft
3 of 7 tasks
add: gotree reformat
#7052 opened Jun 15, 2025 by ammaraziz Loading…
3 of 5 tasks
19
STARSolo add --outBAMsortingBinsN an add a param to force samtools sort
#7051 opened Jun 13, 2025 by pavanvidem Loading…
2
Update pretext to 0.0.5 with adapted test-data
#7050 opened Jun 13, 2025 by SaimMomin12 Loading…
3 of 5 tasks
3
[WIP] added blastfilter script
#7048 opened Jun 13, 2025 by Deeptivarshney • Draft
3 of 5 tasks
4
New tool Addition: Chopper a tool for fast processing (filtering, trimming, ..) of long reads
#7046 opened Jun 12, 2025 by lsterck Loading…
3 of 5 tasks
24
Updating tools/pretext from version 0.0.4 to 0.0.5
#7039 opened Jun 9, 2025 by gxydevbot Loading…
Updating tools/metaphlan from version 4.1.1 to 4.2.2
#7038 opened Jun 9, 2025 by gxydevbot Loading…
1
new tool: galaxy wrappers for the pcdl physicell data lader command line commands
#7034 opened Jun 8, 2025 by elmbeech Loading…
52
Update fastplong wrapper
#7033 opened Jun 5, 2025 by lsterck Loading…
2 of 5 tasks
10
WIP: Update tb_profiler_profile to version 6.6.3
#7031 opened Jun 5, 2025 by pvanheus Loading…
3 of 5 tasks
1
[WIP]: Add Panta
#7029 opened Jun 4, 2025 by FMG0411 • Draft
3 of 5 tasks
19
Update version of humann DM
#7027 opened Jun 3, 2025 by paulzierep Loading…
3 of 5 tasks
2
Updating tools/seqtk from version 1.4 to 1.5
#7019 opened Jun 2, 2025 by gxydevbot Loading…
3
Updating tools/ncbi_entrez_direct from version 22.4 to 24.0
#7017 opened Jun 2, 2025 by gxydevbot Loading…
Updating tools/geopandas from version 1.0.1 to 1.1.0
#7016 opened Jun 2, 2025 by gxydevbot Loading…
2
[WIP] Add CIAlign
#7004 opened May 23, 2025 by Smkingsize • Draft
3 tasks done
83
add: metaMDBG wrapper
#6998 opened May 19, 2025 by Kulik7 Loading…
3 of 5 tasks
26
update metabuli to 1.1.0
#6996 opened May 19, 2025 by astrovsky01 Loading…
3 of 5 tasks
starting minipileup wrapper wip
#6984 opened May 15, 2025 by nekrut Loading…
2 tasks
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