Add tesseract an OCR tool #7064
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| name: tesseract | ||
| owner: iuc | ||
| description: Tesseract is an OCR engine with support for unicode and the ability to recognize more than 100 languages out of the box. | ||
| long_description: Tesseract is an OCR engine with support for unicode and the ability to recognize more than 100 languages out of the box. | ||
| homepage_url: https://github.com/tesseract-ocr/tesseract | ||
| remote_repository_url: https://github.com/galaxyproject/tools-iuc/tree/main/tools/tesseract/ | ||
| categories: | ||
| - Natural Language Processing |
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| <macros> | ||
| <token name="@TOOL_VERSION@">5.0.0</token> | ||
| <token name="@VERSION_SUFFIX@">0</token> | ||
| <xml name="requirements"> | ||
| <requirements> | ||
| <requirement type="package" version="@TOOL_VERSION@">tesseract</requirement> | ||
| </requirements> | ||
| </xml> | ||
| <xml name="creators"> | ||
| <creator> | ||
| <person givenName="Rand" familyName="Zoabi" url="https://github.com/RZ9082" identifier="https://orcid.org/0009-0000-2501-8053" /> | ||
| </creator> | ||
| </xml> | ||
| <xml name="citations"> | ||
| <citations> | ||
| <citation type="doi">10.1145/1815330.1815339</citation> | ||
| <citation type="doi">10.1145/1577802.1577804</citation> | ||
| <citation type="doi">10.1145/1577802.1577809</citation> | ||
| <citation type="doi">10.1109/ICDAR.2009.257</citation> | ||
| <citation type="doi">10.1109/ICDAR.2007.4376991</citation> | ||
| </citations> | ||
| </xml> | ||
| </macros> | ||
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| <tool id="tesseract" name="Tesseract" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="24.2"> | ||
| <description>Optical Character Recognition</description> | ||
| <macros> | ||
| <import>macros.xml</import> | ||
| </macros> | ||
| <expand macro="requirements" /> | ||
| <expand macro="creators" /> | ||
| <command detect_errors="exit_code"><![CDATA[ | ||
| echo '$input_file' | tr ',' '\n' > img_paths && | ||
| tesseract img_paths output | ||
| --tessdata-dir '${tessdata.fields.path}' | ||
| #if $language: | ||
| -l ${ str($language).replace(",","+") } | ||
| #end if | ||
| --psm $psm | ||
| #if $dpi: | ||
| --dpi $dpi | ||
| #end if | ||
| #if $user_words | ||
| --user-words '$user_words' | ||
| #end if | ||
| #if $user_patterns | ||
| --user-patterns '$user_patterns' | ||
| #end if | ||
| #for $format in $output_formats | ||
| -c $format=1 | ||
| #end for | ||
| ]]></command> | ||
| <inputs> | ||
| <param name="input_file" type="data" format="jpg,png,tif,tiff,bmp" label="Image file(s)" multiple="true"/> | ||
| <param name="tessdata" type="select" label="Tessdata" help="Language data models"> | ||
| <options from_data_table="tessdata"> | ||
| <column name="value" index="0"/> | ||
| <column name="name" index="1"/> | ||
| <column name="version" index="2"/> | ||
| <column name="path" index="3"/> | ||
| <filter type="sort_by" column="1"/> | ||
| </options> | ||
| <validator type="no_options" message="A built-in tesseract model is not available. Please ask the Galaxy admins to install one on the server."/> | ||
| </param> | ||
| <param name="user_words" type="data" format="txt" label="User words file" optional="true" help="The user words file allows you to specify a list of words that Tesseract should treat as known words. One word per line"/> | ||
| <param name="user_patterns" type="data" format="txt" label="User patterns file" optional="true" help="One pattern per line in UTF-8 format. For more information please visit the tesseract docs about patterns linked in the help section"/> | ||
| <param name="language" type="select" label="OCR Language(s)" multiple="true" help="In the case of a multilingual image(s), more the one language can be selected"> | ||
| <option value="afr">Afrikaans</option> | ||
| <option value="amh">Amharic</option> | ||
| <option value="ara">Arabic</option> | ||
| <option value="asm">Assamese</option> | ||
| <option value="aze">Azerbaijani</option> | ||
| <option value="aze_cyrl">Azerbaijani - Cyrilic</option> | ||
| <option value="bel">Belarusian</option> | ||
| <option value="ben">Bengali</option> | ||
| <option value="bod">Tibetan</option> | ||
| <option value="bos">Bosnian</option> | ||
| <option value="bre">Breton</option> | ||
| <option value="bul">Bulgarian</option> | ||
| <option value="cat">Catalan; Valencian</option> | ||
| <option value="ceb">Cebuano</option> | ||
| <option value="ces">Czech</option> | ||
| <option value="chi_sim">Chinese simplified</option> | ||
| <option value="chi_tra">Chinese traditional</option> | ||
| <option value="chr">Cherokee</option> | ||
| <option value="cos">Corsican</option> | ||
| <option value="cym">Welsh</option> | ||
| <option value="dan">Danish</option> | ||
| <option value="deu">German</option> | ||
| <option value="deu_latf">German Fraktur Latin</option> | ||
| <option value="div">Dhivehi</option> | ||
| <option value="dzo">Dzongkha</option> | ||
| <option value="ell">Greek, Modern, 1453-</option> | ||
| <option value="eng">English</option> | ||
| <option value="enm">English, Middle, 1100-1500</option> | ||
| <option value="epo">Esperanto</option> | ||
| <option value="equ">Math / equation detection module</option> | ||
| <option value="est">Estonian</option> | ||
| <option value="eus">Basque</option> | ||
| <option value="fas">Persian</option> | ||
| <option value="fao">Faroese</option> | ||
| <option value="fil">Filipino</option> | ||
| <option value="fin">Finnish</option> | ||
| <option value="fra">French</option> | ||
| <option value="frm">French, Middle, ca.1400-1600</option> | ||
| <option value="fry">West Frisian</option> | ||
| <option value="gla">Scottish Gaelic</option> | ||
| <option value="gle">Irish</option> | ||
| <option value="glg">Galician</option> | ||
| <option value="grc">Greek, Ancient, to 1453</option> | ||
| <option value="guj">Gujarati</option> | ||
| <option value="hat">Haitian; Haitian Creole</option> | ||
| <option value="heb">Hebrew</option> | ||
| <option value="hin">Hindi</option> | ||
| <option value="hrv">Croatian</option> | ||
| <option value="hun">Hungarian</option> | ||
| <option value="hye">Armenian</option> | ||
| <option value="iku">Inuktitut</option> | ||
| <option value="ind">Indonesian</option> | ||
| <option value="isl">Icelandic</option> | ||
| <option value="ita">Italian</option> | ||
| <option value="ita_old">Italian - Old</option> | ||
| <option value="jav">Javanese</option> | ||
| <option value="jpn">Japanese</option> | ||
| <option value="kan">Kannada</option> | ||
| <option value="kat">Georgian</option> | ||
| <option value="kat_old">Georgian - Old</option> | ||
| <option value="kaz">Kazakh</option> | ||
| <option value="khm">Central Khmer</option> | ||
| <option value="kir">Kirghiz; Kyrgyz</option> | ||
| <option value="kmr">Kurdish Kurmanji</option> | ||
| <option value="kor">Korean</option> | ||
| <option value="kor_vert">Korean vertical</option> | ||
| <option value="lao">Lao</option> | ||
| <option value="lat">Latin</option> | ||
| <option value="lav">Latvian</option> | ||
| <option value="lit">Lithuanian</option> | ||
| <option value="ltz">Luxembourgish</option> | ||
| <option value="mal">Malayalam</option> | ||
| <option value="mar">Marathi</option> | ||
| <option value="mkd">Macedonian</option> | ||
| <option value="mlt">Maltese</option> | ||
| <option value="mon">Mongolian</option> | ||
| <option value="mri">Maori</option> | ||
| <option value="msa">Malay</option> | ||
| <option value="mya">Burmese</option> | ||
| <option value="nep">Nepali</option> | ||
| <option value="nld">Dutch; Flemish</option> | ||
| <option value="nor">Norwegian</option> | ||
| <option value="oci">Occitan post 1500</option> | ||
| <option value="ori">Oriya</option> | ||
| <option value="osd">Orientation and script detection module</option> | ||
| <option value="pan">Panjabi; Punjabi</option> | ||
| <option value="pol">Polish</option> | ||
| <option value="por">Portuguese</option> | ||
| <option value="pus">Pushto; Pashto</option> | ||
| <option value="que">Quechua</option> | ||
| <option value="ron">Romanian; Moldavian; Moldovan</option> | ||
| <option value="rus">Russian</option> | ||
| <option value="san">Sanskrit</option> | ||
| <option value="sin">Sinhala; Sinhalese</option> | ||
| <option value="slk">Slovak</option> | ||
| <option value="slv">Slovenian</option> | ||
| <option value="snd">Sindhi</option> | ||
| <option value="spa">Spanish; Castilian</option> | ||
| <option value="spa_old">Spanish; Castilian - Old</option> | ||
| <option value="sqi">Albanian</option> | ||
| <option value="srp">Serbian</option> | ||
| <option value="srp_latn">Serbian - Latin</option> | ||
| <option value="sun">Sundanese</option> | ||
| <option value="swa">Swahili</option> | ||
| <option value="swe">Swedish</option> | ||
| <option value="syr">Syriac</option> | ||
| <option value="tam">Tamil</option> | ||
| <option value="tat">Tatar</option> | ||
| <option value="tel">Telugu</option> | ||
| <option value="tgk">Tajik</option> | ||
| <option value="tha">Thai</option> | ||
| <option value="tir">Tigrinya</option> | ||
| <option value="ton">Tonga</option> | ||
| <option value="tur">Turkish</option> | ||
| <option value="uig">Uighur; Uyghur</option> | ||
| <option value="ukr">Ukrainian</option> | ||
| <option value="urd">Urdu</option> | ||
| <option value="uzb">Uzbek</option> | ||
| <option value="uzb_cyrl">Uzbek - Cyrilic</option> | ||
| <option value="vie">Vietnamese</option> | ||
| <option value="yid">Yiddish</option> | ||
| <option value="yor">Yoruba</option> | ||
| </param> | ||
| <param name="output_formats" type="select" label="Output format(s)" multiple="true" optional="false"> | ||
| <option value="tessedit_create_txt" selected="true">Text</option> | ||
| <option value="tessedit_create_pdf">PDF</option> | ||
| <option value="tessedit_create_hocr">HOCR</option> | ||
| <option value="tessedit_create_tsv">TSV</option> | ||
| </param> | ||
| <param argument="--psm" type="select" label="Page Segmentation Mode (PSM)" help="How the page layout is interpreted." optional="true"> | ||
| <option value="0">Orientation and script detection only</option> | ||
| <option value="1">Automatic page segmentation with OSD</option> | ||
| <option value="2">Automatic page segmentation, but no OSD, or OCR</option> | ||
| <option value="3" selected="true">Fully automatic page segmentation, but no OSD</option> | ||
| <option value="4">Assume a single column of text of variable sizes</option> | ||
| <option value="5">Assume a single uniform block of vertically aligned text</option> | ||
| <option value="6">Assume a single uniform block of text</option> | ||
| <option value="7">Treat the image as a single text line</option> | ||
| <option value="8">Treat the image as a single word</option> | ||
| <option value="9">Treat the image as a single word in a circle</option> | ||
| <option value="10">Treat the image as a single character</option> | ||
| <option value="11">Sparse text. Find as much text as possible in no particular order</option> | ||
| <option value="12">Sparse text with OSD</option> | ||
| <option value="13">Raw line. Treat the image as a single text line, bypassing hacks that are Tesseract-specific</option> | ||
| </param> | ||
| <param argument="--dpi" type="integer" label="Image DPI (dots per inch)" min="100" help="When left empty, the resolution in retrieved from the image metadata. If this information in not icluded, Tesseract will make a guess. Tesseract performes best on images with at least 300 dpi" optional="true" /> | ||
| </inputs> | ||
| <outputs> | ||
| <data name="output_text" format="txt" from_work_dir="output.txt" label="${tool.name} on ${on_string}: Text"> | ||
| <filter>'tessedit_create_txt' in output_formats</filter> | ||
| </data> | ||
| <data name="output_pdf" format="pdf" from_work_dir="output.pdf" label="${tool.name} on ${on_string}: PDF"> | ||
| <filter>'tessedit_create_pdf' in output_formats</filter> | ||
| </data> | ||
| <data name="output_hocr" format="html" from_work_dir="output.hocr" label="${tool.name} on ${on_string}: HOCR"> | ||
| <filter>'tessedit_create_hocr' in output_formats</filter> | ||
| </data> | ||
| <data name="output_tsv" format="tsv" from_work_dir="output.tsv" label="${tool.name} on ${on_string}: TSV"> | ||
| <filter>'tessedit_create_tsv' in output_formats</filter> | ||
| </data> | ||
| </outputs> | ||
| <tests> | ||
| <test expect_num_outputs="2"> | ||
| <param name="input_file" value="eurotext.png,test_image_cherokee.png"/> | ||
| <param name="tessdata" value="test_tessdata"/> | ||
| <param name="user_words" value="eng.user-words"/> | ||
| <param name="user_patterns" value="eng.user-patterns"/> | ||
| <param name="language" value="chr"/> | ||
| <param name="output_formats" value="tessedit_create_txt,tessedit_create_pdf"/> | ||
| <param name="psm" value="3"/> | ||
| <output name="output_text" file="output.txt"/> | ||
| <output name="output_pdf" file="output.pdf"/> | ||
| </test> | ||
| <test expect_num_outputs="2"> | ||
| <param name="input_file" value="test_image_cherokee.png"/> | ||
| <param name="tessdata" value="test_tessdata"/> | ||
| <param name="language" value="chr"/> | ||
| <param name="output_formats" value="tessedit_create_hocr,tessedit_create_tsv"/> | ||
| <param name="psm" value="11"/> | ||
| <output name="output_hocr"> | ||
| <assert_contents> | ||
| <has_text text="Ꮳ"/> | ||
| <has_text text="ᏌᎠᏯᏙᏣᎠ"/> | ||
| <has_size value="1785" delta="10"/> | ||
| </assert_contents> | ||
| </output> | ||
| <output name="output_tsv" file="output.tsv"/> | ||
| </test> | ||
| </tests> | ||
| <help><![CDATA[ | ||
| Tesseract OCR Tool | ||
| ------------------ | ||
| Tesseract is an OCR engine with support for unicode and the ability to recognize more than 100 languages out of the box. | ||
|
|
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| * `Tesseract User Manual <https://tesseract-ocr.github.io/tessdoc/>`_ | ||
|
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| * `API example for user patterns <https://tesseract-ocr.github.io/tessdoc/APIExample-user_patterns.html>`_ | ||
|
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| **License** | ||
|
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| * `Apache-2.0 <https://raw.githubusercontent.com/tesseract-ocr/tesseract/refs/heads/main/LICENSE>`_ | ||
| ]]></help> | ||
| <expand macro="citations" /> | ||
| </tool> |
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| 1-\d\d\d-GOOG-411 | ||
| www.\n\\\*.com |
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| the | ||
| quick | ||
| brown | ||
| fox | ||
| jumped |
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| level page_num block_num par_num line_num word_num left top width height conf text | ||
| 1 1 0 0 0 0 0 0 1024 1024 -1 | ||
| 2 1 1 0 0 0 92 296 875 130 -1 | ||
| 3 1 1 1 0 0 92 296 875 130 -1 | ||
| 4 1 1 1 1 0 92 296 875 130 -1 | ||
| 5 1 1 1 1 1 92 297 174 129 37.403927 Ꮳ | ||
| 5 1 1 1 1 2 286 296 681 130 16.962364 ᏌᎠᏯᏙᏣᎠ | ||
| 2 1 2 0 0 0 164 572 694 133 -1 | ||
| 3 1 2 1 0 0 164 572 694 133 -1 | ||
| 4 1 2 1 1 0 164 572 694 133 -1 | ||
| 5 1 2 1 1 1 164 568 364 184 53.049427 ᎪᎶᎩ) | ||
| 5 1 2 1 1 2 650 572 200 132 35.113586 Ꮾ(Ꭰ |
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| ᎢᏂᏮ (ᏄᏌᎥᏟᏦ) (ᏏᎵᏣᎳᏲ). (Ꮅ9Ꮶ). ᎫᏢᏚᎥ | ||
|
There was a problem hiding this comment. Mh, this is not a very good result. Is that intentional? There was a problem hiding this comment. I guess the model is just to small? |
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| ᎤᏙᏮᎢ (ᏂᏮ ᏕᏎ3Ꮷ,Ꮞ5Ꮪ6.ᏤᎦ “ᎥᏧᏃᎩ- Ꮱ90 ᏧᎾᏴ | ||
| (Ꮭ ᏧᏄᏟᏦᎥᏙᏴᏣᎾᏚᏮ, 3Ꮪ 12. 506 ᎾᎴ Ꭼ--Ꮑ311 | ||
| ᎥᎢᏣᏁᎸ ᏄᏚᏢᎸ ᎠᏁ 1161 (ᏇᎳᏮᏌᏚᎥ (6. ᏟᏣᎥᎸ ᎥᏚ ᏚᏢᎸᏒ. | ||
| ᎠᎴᎢ ..ᏚᏟᏂᏒᏮᎥ16” ᏏᎠᎱᎸᏄᎠᏮ ᎬᎿᏟᏂᏚ ᏚᏢᎱᎥᎸᏰᎥ | ||
| (ᏏᏮᎢ ᏧᏮᎯᏒ (Ꭿ016(Ꮢ ᎻᏄᏌᏲᏁᏧ. ᏞᏮ ᎢᏣᏁᎸᎢᏧ ᏏᎢᏛᏌᏲ | ||
| ᏄᎢᏄᏢᎠᎥᏧᏮᏅ ᏚᎸᏌᎥᏮ ᎠᎧᏄᎱ-ᏄᎶᏮᏚᏚᏌᏚ 16 ᏟᏂᎥᏮᏁ | ||
| ᎠᏰᎸᎱᏮᏚᏚᏮᏔᏦ. ᏞᏘ ᏙᎾᎤᎥᏢᏮ (131ᎢᏣᎠ6 ᎱᎸᎠᎥᏧᎸ | ||
| ᏚᎸ1(3 ᏚᏅᏣᏢᎢᎸ ᎥᎥ ᏟᏱᏒᏮ ᎠᎥᏪᎱᎾ. ᎬᎥ ᏃᎾᎱᎱᎾ | ||
| ᎢᏁᎸᎢᎱᏫᏒ ᎱᏰᎠᎥᏧᎾ ᏚᏰᎥᎥᎸ ᏚᎾᏏᎱᏮ ᏮᎥ ᎠᎾᎥᎱᎾ | ||
| ᎠᏮᎱᏮᏃᏣᏚᎾ. Ꭺ ᎢᎸᎠᏣᏚᏘ (ᏁᎪ1ᎢᏣᎥᏁ ᎢᎦᏁᎠᎥᏧᎸᎸ | ||
| ᏚᎸ1(3 ᏚᎾᏣᎠᎢᏮ Ꮕ ᏟᎸᏣ ᎠᎱᎾᎬᏪᏌᎥᏣᎾᏚᎾ. | ||
| Ꮳ ᏌᎠᏯᏙᏣᎠ | ||
| ᎪᎶᎩ)1 Ꮾ6Ꭰ | ||
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| test_tessdata Default 4.1.0 4.1.0 ${__HERE__}/tessdata |
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| #This is a sample file distributed with Galaxy that enables tools | ||
| #to use a tessdata model folder. The tessdata.loc | ||
| #file needs this format (longer white space is the TAB character): | ||
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| #<unique_build_id> <display_name> <version> <DB_folder_path> | ||
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| # for example: | ||
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| # tessdata name 0.1 0.1 /data/tessdata |
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| <tables> | ||
| <!-- Location of tessdata files --> | ||
| <table name="tessdata" comment_char="#"> | ||
| <columns>value, name, version, path</columns> | ||
| <file path="tool-data/tessdata.loc" /> | ||
| </table> | ||
| </tables> |
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| <tables> | ||
| <!-- Location of tessdata files --> | ||
| <table name="tessdata" comment_char="#"> | ||
| <columns>value, name, version, path</columns> | ||
| <file path="${__HERE__}/test-data/tessdata.loc" /> | ||
| </table> | ||
| </tables> |
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Uhm ORCID as identifier this is cool, is this rendering correctly?