Differential Expression Analysis tool box R lang package for omics data

An R package to plot interactive three-way differential expression analysis

A Snakemake workflow and MrBiomics module for performing and visualizing differential (expression) analyses (DEA) on NGS data powered by the R package limma.

R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening data.

Multi-omics module that includes RNAseq, Epigenetics, and integrated multi-omics analyses developed as part of the NIGMS Sandbox project

Approaches to identify Differential Rhythmicity

Software for intuitively doing Differential Gene Expression (DGE) analysis on Windows and GNU\Linux, based on R packages.

An awesome Oxford Nanopore Pipeline for direct RNA-sequencing

A library for differential expression and gene set enrichment analysis based on hydra and pydantic.

Consensus pathway analysis module developed by the University of Nevada at Reno

This project provides a reproducible workflow for bulk RNA-Seq data analysis, including preprocessing, quality control, differential expression analysis, and visualization using edgeR and limma-voom. It focuses on evaluating pipeline performance while analyzing RNA-Seq data from a case study on mouse mammary gland gene expression.

Multi-omics differential expression and integration using PPI networks

The damidBind R package provides a means of determining differential binding/gene transcription/chromatin accessibility for DamID-seq data..

RNA-Seq analysis pipeline for investigating transcriptional changes during mammalian cardiac regeneration.

Method of Combined P-value to identify Differential Expressed Gene in dataset

Differential gene expression and gene enrichment analyses of B-cell line with ectopic expression of HIV-1 Tat protein

MICTI- Marker gene Identification for Cell Type Identity

maple differential equation

EasyDEA: An Automated Tool for Differential Expression Analysis