Change the repository type filter
All
Repositories list
169 repositories
- Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
modules
Publicviralmetagenome
PublicDetect iSNV and construct whole viral genomes from metagenomic sampleswebsite
Public- Assembly and binning of metagenomes
- Bioinformatics pipeline that makes use of expression and open chromatin data to identify differentially active transcription factors across conditions.
rnaseq
Public- Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.
test-datasets
Public- A fully reproducible and state-of-the-art ancient DNA analysis pipeline
magmap
Publicproposals
Publictools
Publicdiseasemodulediscovery
PublicA pipeline for network-based disease module identification.taxprofiler
PublicHighly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic datasetup-nextflow
Publicrnavar
Publiccellpainting
Publicabotyper
Publicmeerpipe
Publicfastquorum
Publicmetatdenovo
PublicAssembly and annotation of metatranscriptomic or metagenomic data for prokaryotic, eukaryotic and viruses.drop
Publicrnafusion
Publicvariantbenchmarking
Publiconcoanalyser
Publicrnadnavar
Publicalleleexpression
Publicgenomeqc
PublicCompare the quality of multiple genomes, along with their annotations.