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Pull requests: nf-core/tools

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Pull requests list

Linting: Add linting of topics
#3902 opened Nov 14, 2025 by mirpedrol Loading…
4
switch pre-commit to prek for development
#3899 opened Nov 13, 2025 by mashehu Loading… 3.6.0
3
Enable CI tests for pipelines/download
#3898 opened Nov 13, 2025 by rrahn Loading…
1 of 4 tasks
1
feat(template): trigger nf-test full run if scripts in bin modified
#3897 opened Nov 13, 2025 by prototaxites Loading…
2 of 4 tasks
3.6.0
3
Revert "chore(deps): update mcr.microsoft.com/devcontainers/base:debian docker digest to 2e826a6"
#3896 opened Nov 12, 2025 by mashehu Loading…
Fix GH API rate limits.
#3895 opened Nov 12, 2025 by rrahn Loading…
1 of 4 tasks
3
Update pipeline creation information page to be more exclusive as to what should use the full nf-core pipeline template
#3891 opened Nov 11, 2025 by jfy133 Loading…
4 tasks
3
bump to 3.5.0
#3884 opened Nov 7, 2025 by mashehu Loading…
5
dev -> main for 3.5.0
#3872 opened Nov 5, 2025 by mashehu Loading…
1
simplify TEMPLATE with nf-core-utils 0.4.0
#3870 opened Nov 4, 2025 by maxulysse Loading…
4 tasks
4
Improve file ignores in workflow file enumeration
#3820 opened Oct 8, 2025 by jmuhlich Loading…
1 of 4 tasks
1
4
TEMPLATE: add a fallback for new outputdir parameter
#3798 opened Oct 3, 2025 by mashehu Loading… 3.5.0
2
Migrate template to nf-core-utils plugin
#3790 opened Oct 1, 2025 by edmundmiller • Draft
4 tasks
@adamrtalbot
15
Use branch-deploy action
#3744 opened Sep 2, 2025 by kevinbackhouse Loading…
4 tasks
3
Tests cleanup
#3733 opened Aug 27, 2025 by edmundmiller • Draft
2
@edmundmiller
15
General: add pytest for get_wf_files
#3725 opened Aug 26, 2025 by mirpedrol Loading… 3.5.0
7
Patch patch command
#3714 opened Aug 15, 2025 by ErikDanielsson Loading…
2 of 4 tasks
@ErikDanielsson
5
TEMPLATE - add trainling slash for pipelines_testdata_base_path
#3701 opened Aug 5, 2025 by maxulysse Loading…
4 tasks
3
Lint for version captures in modules
#3676 opened Jul 11, 2025 by edmundmiller Loading…
4 tasks
3.5.0
@edmundmiller
27
Fix collectFile cache issue causing software version inconsistencies
#3654 opened Jul 2, 2025 by ewels • Draft
2 of 4 tasks
1
@ewels
11
linting: fix type error when linting modules.json
#3611 opened Jun 11, 2025 by mashehu Loading…
1
Document ext.args in meta yml
#3451 opened Feb 12, 2025 by awgymer Loading…
4 tasks
1
13
create template GENERATE_DOWNSTREAM_SAMPLESHEETS for tools
#3261 opened Oct 29, 2024 by Joon-Klaps • Draft
4 tasks
3.6.0
11
Create pre-commit hooks
#3141 opened Aug 26, 2024 by edmundmiller Loading…
@edmundmiller
7
Adopt pyproject.toml
#3139 opened Aug 26, 2024 by edmundmiller • Draft
@edmundmiller
3
ProTip! What’s not been updated in a month: updated:<2025-10-15.