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Patch: Update image version for openproblems/base_* images #10

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Merged
merged 1 commit into from
Jun 11, 2025
Merged

Patch: Update image version for openproblems/base_* images #10

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2 changes: 1 addition & 1 deletion src/control_methods/negative_normal/config.vsh.yaml
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Expand Up @@ -13,7 +13,7 @@ resources:

engines:
- type: docker
image: openproblems/base_r:1.0.0
image: openproblems/base_r:1

runners:
- type: executable
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2 changes: 1 addition & 1 deletion src/control_methods/negative_shuffle/config.vsh.yaml
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Expand Up @@ -12,7 +12,7 @@ resources:

engines:
- type: docker
image: openproblems/base_r:1.0.0
image: openproblems/base_r:1

runners:
- type: executable
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2 changes: 1 addition & 1 deletion src/control_methods/positive/config.vsh.yaml
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Expand Up @@ -18,7 +18,7 @@ resources:

engines:
- type: docker
image: openproblems/base_r:1.0.0
image: openproblems/base_r:1
setup:
- type: r
cran: SRTsim
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2 changes: 1 addition & 1 deletion src/methods/scdesign2/config.vsh.yaml
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Expand Up @@ -19,7 +19,7 @@ resources:

engines:
- type: docker
image: openproblems/base_r:1.0.0
image: openproblems/base_r:1
setup:
- type: apt
packages: [r-bioc-singlecellexperiment, git]
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2 changes: 1 addition & 1 deletion src/methods/scdesign3_nb/config.vsh.yaml
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Expand Up @@ -37,7 +37,7 @@ resources:

engines:
- type: docker
image: openproblems/base_r:1.0.0
image: openproblems/base_r:1
setup:
- type: r
github:
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2 changes: 1 addition & 1 deletion src/methods/scdesign3_poisson/config.vsh.yaml
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Expand Up @@ -37,7 +37,7 @@ resources:

engines:
- type: docker
image: openproblems/base_r:1.0.0
image: openproblems/base_r:1
setup:
- type: apt
packages: [r-bioc-singlecellexperiment, git]
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2 changes: 1 addition & 1 deletion src/methods/sparsim/config.vsh.yaml
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Expand Up @@ -18,7 +18,7 @@ resources:

engines:
- type: docker
image: openproblems/base_r:1.0.0
image: openproblems/base_r:1
setup:
- type: apt
packages: [git, r-bioc-singlecellexperiment]
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2 changes: 1 addition & 1 deletion src/methods/splatter/config.vsh.yaml
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Expand Up @@ -17,7 +17,7 @@ resources:

engines:
- type: docker
image: openproblems/base_r:1.0.0
image: openproblems/base_r:1
setup:
- type: apt
packages: r-bioc-splatter
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2 changes: 1 addition & 1 deletion src/methods/srtsim/config.vsh.yaml
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Expand Up @@ -18,7 +18,7 @@ resources:

engines:
- type: docker
image: openproblems/base_r:1.0.0
image: openproblems/base_r:1
setup:
- type: r
cran: SRTsim
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2 changes: 1 addition & 1 deletion src/methods/symsim/config.vsh.yaml
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Expand Up @@ -18,7 +18,7 @@ resources:

engines:
- type: docker
image: openproblems/base_r:1.0.0
image: openproblems/base_r:1
setup:
- type: r
bioc: SingleCellExperiment
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2 changes: 1 addition & 1 deletion src/methods/zinbwave/config.vsh.yaml
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Expand Up @@ -18,7 +18,7 @@ resources:

engines:
- type: docker
image: openproblems/base_r:1.0.0
image: openproblems/base_r:1
setup:
- type: apt
packages: [r-bioc-splatter, r-bioc-zinbwave, r-bioc-singlecellexperiment]
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2 changes: 1 addition & 1 deletion src/metrics/downstream/config.vsh.yaml
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Expand Up @@ -110,7 +110,7 @@ resources:

engines:
- type: docker
image: openproblems/base_r:1.0.0
image: openproblems/base_r:1
setup:
- type: r
bioc:
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2 changes: 1 addition & 1 deletion src/metrics/ks_statistic_gene_cell/config.vsh.yaml
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Expand Up @@ -296,7 +296,7 @@ resources:

engines:
- type: docker
image: openproblems/base_r:1.0.0
image: openproblems/base_r:1
setup:
- type: r
bioc: [edger, sparseMatrixStats]
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2 changes: 1 addition & 1 deletion src/metrics/ks_statistic_sc_features/config.vsh.yaml
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Expand Up @@ -57,7 +57,7 @@ resources:

engines:
- type: docker
image: openproblems/base_r:1.0.0
image: openproblems/base_r:1
setup:
- type: r
bioc:
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2 changes: 1 addition & 1 deletion src/metrics/ks_statistic_spatial/config.vsh.yaml
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Expand Up @@ -75,7 +75,7 @@ resources:

engines:
- type: docker
image: openproblems/base_python:1.0.0
image: openproblems/base_python:1
setup:
- type: python
packages:
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2 changes: 1 addition & 1 deletion src/process_datasets/convert/config.vsh.yaml
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Expand Up @@ -10,7 +10,7 @@ resources:

engines:
- type: docker
image: openproblems/base_r:1.0.0
image: openproblems/base_r:1
setup:
- type: r
bioc: [SingleCellExperiment]
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2 changes: 1 addition & 1 deletion src/process_datasets/generate_sim_spatialcluster/config.vsh.yaml
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Expand Up @@ -35,7 +35,7 @@ test_resources:

engines:
- type: docker
image: openproblems/base_r:1.0.0
image: openproblems/base_r:1
setup:
- type: r
bioc:
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2 changes: 1 addition & 1 deletion src/process_datasets/precompute_downstream/config.vsh.yaml
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Expand Up @@ -31,7 +31,7 @@ test_resources:

engines:
- type: docker
image: openproblems/base_r:1.0.0
image: openproblems/base_r:1
setup:
- type: r
github: [xzhoulab/SPARK, stevexniu/spots]
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2 changes: 1 addition & 1 deletion src/process_datasets/sc_features/config.vsh.yaml
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Expand Up @@ -30,7 +30,7 @@ test_resources:

engines:
- type: docker
image: openproblems/base_r:1.0.0
image: openproblems/base_r:1
setup:
- type: r
github:
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