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Open Problems in Single-Cell Analysis

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https://openproblems.bio

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openproblems openproblems Public

Formalizing and benchmarking open problems in single-cell genomics

Shell 337 83
website website Public

Legacy website

TeX 4 8

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Showing 10 of 36 repositories

datasets Public

openproblems-bio/datasets’s past year of commit activity

Shell 0 MIT 0 0 0 Updated Jun 20, 2025
task_cyto_batch_integration Public

openproblems-bio/task_cyto_batch_integration’s past year of commit activity

Python 1 MIT 1 9 2 Updated Jun 20, 2025
openproblems Public
Formalizing and benchmarking open problems in single-cell genomics

openproblems-bio/openproblems’s past year of commit activity

Shell 337 MIT 83 12 (1 issue needs help) 3 Updated Jun 20, 2025
docs Public

openproblems-bio/docs’s past year of commit activity

TeX 1 0 8 1 Updated Jun 18, 2025
task_grn_inference Public

openproblems-bio/task_grn_inference’s past year of commit activity

Python 8 MIT 3 2 (1 issue needs help) 0 Updated Jun 17, 2025
task_denoising Public
Removing noise in sparse single-cell RNA-sequencing count data

openproblems-bio/task_denoising’s past year of commit activity

Python 1 MIT 2 2 0 Updated Jun 11, 2025
task_template Public template
This repo is a template to create a new task that has the correct files and structure needed to start a new task.

openproblems-bio/task_template’s past year of commit activity

Shell 2 MIT 2 0 0 Updated Jun 11, 2025
task_spatial_simulators Public
Benchmarking spatial simulators

openproblems-bio/task_spatial_simulators’s past year of commit activity

R 0 MIT 1 0 1 Updated Jun 11, 2025
task_spatial_decomposition Public

openproblems-bio/task_spatial_decomposition’s past year of commit activity

Python 0 0 1 0 Updated Jun 11, 2025
task_batch_integration Public

openproblems-bio/task_batch_integration’s past year of commit activity

Python 8 MIT 9 6 10 Updated Jun 11, 2025

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