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@mgxd mgxd commented Aug 28, 2025

implements #476
depends on nipreps/niworkflows#966

this pr adds a multiverse as a new option to --output-layout, which:

additionally, the derivative dataset_description.json produced will now always include this hash.

@mgxd mgxd force-pushed the enh/multiverse-mode branch from 94d8ede to e228bb3 Compare September 2, 2025 14:51
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codecov bot commented Sep 2, 2025

Codecov Report

❌ Patch coverage is 50.00000% with 44 lines in your changes missing coverage. Please review.
✅ Project coverage is 57.65%. Comparing base (a017df0) to head (e18406b).
⚠️ Report is 18 commits behind head on master.

Files with missing lines Patch % Lines
nibabies/cli/parser.py 21.21% 23 Missing and 3 partials ⚠️
nibabies/utils/derivatives.py 30.00% 6 Missing and 1 partial ⚠️
nibabies/reports/core.py 0.00% 6 Missing ⚠️
nibabies/config.py 91.30% 0 Missing and 2 partials ⚠️
nibabies/workflows/base.py 33.33% 1 Missing and 1 partial ⚠️
nibabies/cli/run.py 0.00% 1 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##           master     #481      +/-   ##
==========================================
- Coverage   57.73%   57.65%   -0.09%     
==========================================
  Files          72       72              
  Lines        6823     6888      +65     
  Branches      832      844      +12     
==========================================
+ Hits         3939     3971      +32     
- Misses       2673     2702      +29     
- Partials      211      215       +4     

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@mgxd mgxd marked this pull request as ready for review September 9, 2025 17:57
@mgxd mgxd merged commit 2e1e2de into master Sep 16, 2025
16 of 18 checks passed
@mgxd mgxd deleted the enh/multiverse-mode branch September 17, 2025 14:54
mgxd added a commit that referenced this pull request Sep 25, 2025
25.2.0 (September 25, 2025)

The first release of the 25.2.x series.

This release synchronizes with downstream dependencies, as well as
leverages TemplateFlow to retrieve intermediate transforms used during multi-step registration.

If you are reusing a previous TemplateFlow cache (which may be the case if running with
Apptainer / Singularity), you will need to clear or update your cache to ensure these new files
are available.

Thanks to @LuciMoore for the contribution!

Documentation
  * DOC: MCRIBS and surf recon methods chosen based on age (#485)

Enhancements
  * ENH: Retrieve transforms with templateflow (#486)
  * ENH: Save cortex mask (#487)
  * ENH: Add multiverse output layout (#481)

Bug Fixes
  * FIX: Default to grid-constant when resampling BOLD to output spaces
  * FIX: Propagate error code if pipeline run is unsuccessful
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