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@nipreps

NeuroImaging PREProcessing toolS

NiPreps (NeuroImaging PREProcessing toolS)

Please visit www.nipreps.org for a more comprehensive description of this community. Don't forget to also learn about the sister initiative www.templateflow.org.

News and some discussions take place at the Nipreps GitHub discussions.

About

The current neuroimaging workflow has matured into a large chain of processing and analysis steps involving a large number of experts, across imaging modalities and applications. The development and fast adoption of fMRIPrep have revealed that neuroscientists need tools that simplify their research workflow, provide visual reports and checkpoints, and engender trust in the tool itself. The NiPreps framework extends fMRIPrep's approach and principles to new imaging modalities. The vision for NiPreps is to provide end-users (i.e., researchers) with applications that allow them to perform quality control smoothly and to prepare their data for modeling and statistical analysis.

Acknowledgments

This work is steered and maintained by the NiPreps Community. The development of this framework is supported the NIMH (RF1MH121867, RAP, OE).

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  1. fmriprep fmriprep Public

    fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

    HTML 685 305

  2. dmriprep dmriprep Public

    dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

    Python 69 24

  3. smriprep smriprep Public

    Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)

    Python 146 43

  4. mriqc mriqc Public

    Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain

    Python 334 133

Repositories

Showing 10 of 57 repositories
  • smriprep Public

    Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)

    nipreps/smriprep’s past year of commit activity
    Python 146 Apache-2.0 43 58 (1 issue needs help) 6 Updated Aug 14, 2025
  • fmriprep Public

    fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

    nipreps/fmriprep’s past year of commit activity
    HTML 685 Apache-2.0 305 312 (24 issues need help) 10 Updated Aug 13, 2025
  • nifreeze Public

    A flexible framework for volume-wise artifact estimation and correction across multiple 4D neuroimaging modalities (diffusion MRI, functional MRI, and PET)

    nipreps/nifreeze’s past year of commit activity
    Python 5 Apache-2.0 5 30 (1 issue needs help) 23 Updated Aug 13, 2025
  • sdcflows Public

    Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes

    nipreps/sdcflows’s past year of commit activity
    Python 43 Apache-2.0 28 33 (1 issue needs help) 5 Updated Aug 12, 2025
  • nireports Public

    The NiPreps' Reporting and Visualization system - report templates and "reportlets"

    nipreps/nireports’s past year of commit activity
    Python 10 Apache-2.0 20 19 (1 issue needs help) 3 Updated Aug 11, 2025
  • version-schemes Public

    setuptools_scm plugin for nipreps version schemes

    nipreps/version-schemes’s past year of commit activity
    Python 2 Apache-2.0 0 0 0 Updated Aug 11, 2025
  • nipreps.github.io Public

    The NiPreps landing page

    nipreps/nipreps.github.io’s past year of commit activity
    Python 3 CC0-1.0 11 9 (1 issue needs help) 1 Updated Aug 11, 2025
  • fmripost-phase Public

    An attempt at an fMRIPost workflow for handling phase data

    nipreps/fmripost-phase’s past year of commit activity
    Python 3 Apache-2.0 1 10 1 Updated Aug 6, 2025
  • niworkflows Public

    Common workflows for MRI (anatomical, functional, diffusion, etc)

    nipreps/niworkflows’s past year of commit activity
    Python 99 Apache-2.0 54 70 (4 issues need help) 5 Updated Aug 1, 2025
  • fmripost-template Public template

    A generic fMRIPost workflow

    nipreps/fmripost-template’s past year of commit activity
    Python 0 Apache-2.0 4 6 3 Updated Aug 1, 2025

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