CI: test all PnetCDF test programs #874
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| name: PnetCDF | ||
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| on: | ||
| push: | ||
| branches: main | ||
| pull_request: | ||
| branches: main | ||
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| env: | ||
| PNETCDF_VERSION: 1.12.3 | ||
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| jobs: | ||
| build: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - uses: actions/checkout@v3 | ||
| - name: Set up dependencies | ||
| run: | | ||
| sudo apt-get update | ||
| sudo apt-get install automake autoconf libtool libtool-bin m4 | ||
| # mpi | ||
| sudo apt-get install mpich | ||
| # zlib | ||
| sudo apt-get install zlib1g-dev | ||
| - name: Install PnetCDF | ||
| run: | | ||
| echo "---- Install PnetCDF library into ${GITHUB_WORKSPACE}/PnetCDF" | ||
| cd ${GITHUB_WORKSPACE} | ||
| rm -rf PnetCDF | ||
| mkdir PnetCDF | ||
| cd PnetCDF | ||
| wget -cq https://parallel-netcdf.github.io/Release/pnetcdf-${PNETCDF_VERSION}.tar.gz | ||
| tar -zxf pnetcdf-${PNETCDF_VERSION}.tar.gz | ||
| cd pnetcdf-${PNETCDF_VERSION} | ||
| ./configure --prefix=${GITHUB_WORKSPACE}/PnetCDF \ | ||
| --silent \ | ||
| --enable-shared \ | ||
| MPICC=mpicc \ | ||
| MPICXX=mpicxx \ | ||
| MPIF77=mpifort \ | ||
| MPIF90=mpifort | ||
| make -s LIBTOOLFLAGS=--silent V=1 -j 8 install > qout 2>&1 | ||
| rm -f qout | ||
| - name: configure darshan-runtime and darshan-util | ||
| if: ${{ success() }} | ||
| run: | | ||
| cd ${GITHUB_WORKSPACE} | ||
| mkdir -p darshan_install | ||
| # Darshan installation path | ||
| export DARSHAN_INSTALL_PATH=${GITHUB_WORKSPACE}/darshan_install | ||
| # Darshan log file path | ||
| export DARSHAN_LOGPATH=${GITHUB_WORKSPACE}/logs | ||
| mkdir -p $DARSHAN_LOGPATH | ||
| # clone autoperf module | ||
| git submodule update --init | ||
| ./prepare.sh | ||
| mkdir -p build | ||
| cd build | ||
| ../configure --prefix=$DARSHAN_INSTALL_PATH \ | ||
| --with-log-path-by-env=DARSHAN_LOGPATH \ | ||
| --with-jobid-env=NONE \ | ||
| --enable-pnetcdf-mod \ | ||
| --with-pnetcdf=${GITHUB_WORKSPACE}/PnetCDF \ | ||
| RUNTIME_CC=mpicc | ||
| - name: Dump configure log files if configure failed | ||
| if: ${{ failure() }} | ||
| run: | | ||
| cd ${GITHUB_WORKSPACE}/build | ||
| echo "-------- config.log --------" | ||
| cat config.log | ||
| echo "-------- darshan-runtime/config.log --------" | ||
| cat darshan-runtime/config.log | ||
| echo "-------- darshan-util/config.log --------" | ||
| cat darshan-util/config.log | ||
| - name: Test make, make check, and make install | ||
| if: ${{ success() }} | ||
| run: | | ||
| echo "make darshan-runtime and darshan-util" | ||
| cd ${GITHUB_WORKSPACE}/build | ||
| # Darshan log file path | ||
| export DARSHAN_LOGPATH=${GITHUB_WORKSPACE}/logs | ||
| make -j 8 | ||
| echo "-------- make check --------" | ||
| make check | ||
| echo "-------- make install --------" | ||
| make install | ||
| - name: Run PnetCDF make check | ||
| run: | | ||
| cd ${GITHUB_WORKSPACE}/PnetCDF/pnetcdf-${PNETCDF_VERSION} | ||
| make -s LIBTOOLFLAGS=--silent V=1 -j 8 tests > qout 2>&1 | ||
| # Darshan log file path | ||
| export DARSHAN_LOGPATH=${GITHUB_WORKSPACE}/logs | ||
| export LD_PRELOAD=${GITHUB_WORKSPACE}/darshan_install/lib/libdarshan.so | ||
| make check | ||
| unset LD_PRELOAD | ||
| - name: Print PnetCDF log files if make check failed | ||
| if: ${{ failure() }} | ||
| run: | | ||
| cd ${GITHUB_WORKSPACE}/PnetCDF/pnetcdf-${PNETCDF_VERSION} | ||
| cat src/utils/ncvalidator/*.log | ||
| cat test/*/*.log | ||
| - name: Run PnetCDF make ptest | ||
| run: | | ||
| cd ${GITHUB_WORKSPACE}/PnetCDF/pnetcdf-${PNETCDF_VERSION} | ||
| # Darshan log file path | ||
| export DARSHAN_LOGPATH=${GITHUB_WORKSPACE}/logs | ||
| export LD_PRELOAD=${GITHUB_WORKSPACE}/darshan_install/lib/libdarshan.so | ||
| make ptest | ||
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There was a problem hiding this comment. Check log files are correctly generated here, too? Later on, we could add a script that checks more in-depth details as part of the workflow, but something simple is fine for now. There was a problem hiding this comment. How does one check whether a Darshan log file is correct or not? |
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| unset LD_PRELOAD | ||
| make -s distclean >> qout 2>&1 | ||
| rm -f qout | ||
| - name: Run Darshan make distcheck | ||
| if: ${{ success() }} | ||
| run: | | ||
| echo "make distcheck" | ||
| cd ${GITHUB_WORKSPACE}/build | ||
| make distcheck DISTCHECK_CONFIGURE_FLAGS="--with-log-path-by-env=DARSHAN_LOGPATH --with-jobid-env=NONE --enable-pnetcdf-mod --with-pnetcdf=${GITHUB_WORKSPACE}/PnetCDF RUNTIME_CC=mpicc" | ||
| - name: make distclean | ||
| run: | | ||
| echo "make distclean" | ||
| cd ${GITHUB_WORKSPACE}/build | ||
| make distclean | ||
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Can we add simple logic here to test for existence of expected number of Darshan logs for these tests or something? You can see in the workflow output that no log files are created because we never set the DARSHAN_LOGPATH env variable. I think the least we could do is assert that the expected number of logs was generated (and that the log path is correctly set so Darshan can write them).
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Setting DARSHAN_LOGPATH has been added.
How does Darshah check the number of log files?
Note the number of PnetCDF test programs can increase in new releases.