1348 Fix initialization recovered ode secir

[HenrZu]

Changes and Information

Please briefly list the changes (main added features, changed items, or corrected bugs) made:

• subtract all unscaled compartments except Susceptible in the same region/age group as explained in https://doi.org/10.1371/journal.pcbi.1010054.s002 in Eq.12 when initialize the recovered compartment

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Merge Request - Guideline Checklist

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Checks by code author

• Every addressed issue is linked (use the "Closes #ISSUE" keyword below)
• New code adheres to coding guidelines
• No large data files have been added (files should in sum not exceed 100 KB, avoid PDFs, Word docs, etc.)
• Tests are added for new functionality and a local test run was successful (with and without OpenMP)
• Appropriate documentation within the code (Doxygen) for new functionality has been added in the code
• Appropriate external documentation (ReadTheDocs) for new functionality has been added to the online documentation
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• (For ABM development) Checked benchmark results and ran and posted a local test above from before and after development to ensure performance is monitored.

Checks by code reviewer(s)

• Corresponding issue(s) is/are linked and addressed
• Code is clean of development artifacts (no deactivated or commented code lines, no debugging printouts, etc.)
• Appropriate unit tests have been added, CI passes, code coverage and performance is acceptable (did not decrease)
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[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 97.31%. Comparing base (b1843bf) to head (e733f84).
⚠️ Report is 1 commits behind head on main.

Additional details and impacted files

@@            Coverage Diff             @@
##             main    #1353      +/-   ##
==========================================
+ Coverage   97.29%   97.31%   +0.01%     
==========================================
  Files         174      174              
  Lines       15105    15101       -4     
==========================================
- Hits        14697    14696       -1     
+ Misses        408      405       -3     

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