custom

Characteristics for a custom sequence type can be defined by naming a section by the source and type columns of the GFF. For example,

ZmChr1 IBM2_2008_Neighbors locus 882.70 882.70 . . . Name=tb1;color=moss

would be identified by IBM2_2008_Neighbors:locus.

Custom fields are initialised by having any text in the header portion of the ini file [ header ] that isn't one of the already discussed reserved keywords (general,centromere,position,border,range,marker)

After defing a custom feature, it inherits the configuration of the parent glyph = type, all of which can be overridden in this section.

The following two options are required to be defined for a custom glyph

Option	Description
feature	Either : or now just , uses col2:col3 or col3 to determine features to draw
glyph	Which of the above glyphs to draw the feature as.