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centromere
Andrew Wilkey edited this page Apr 9, 2019
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A centromere is a specialized feature; displayed over top the chromosome bar. A centromere is identified by the word "centromere" in the 3rd column of the GFF file.
| Option | Default | Description |
|---|---|---|
| centromere_overhang | 2 | Centromere rectangle or line extends this far on either side of the chromosome |
| color | gray30 | (color) Color to use when drawing the centromere |
| transparent | 0 | (boolean) Whether or not to use transparency |
| draw_label | 0 | (boolean) 1 = draw centromere label |
| font_face | fontDefault | Font face to use for centromere label |
| font_size | 6 | Size of label in pt |
| label_offset | 0 | Start labels this many pixels right of glyph (negative for left) |
| label_color | gray30 | Color to use for labels |
The following options have been added from the legacy format:
| Option | Default | Description |
|---|---|---|
| border | 0 | (boolean) Draw a border around the feature. |
| border_width | 2 | Width of a drawn border in px |
| border_color | black | color of drawn border |
| transparent_percent | 0.6 | Percent transparency from 0-1 |
| hide_label_overlap | 0 | (boolean) hide labels if they overlap others |