Dev #957
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| name: build | |
| on: | |
| push: | |
| branches: [ "main" ] | |
| pull_request: | |
| branches: [ "main" , "dev"] | |
| workflow_dispatch: | |
| jobs: | |
| build: | |
| runs-on: | |
| group: LargerInstance | |
| container: | |
| image: rcpeene/openscope_databook:latest | |
| env: | |
| DANDI_API_KEY: ${{ secrets.DANDI_API_KEY }} | |
| TESTING: True | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| ref: ${{ github.ref }} | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.10.11' | |
| # - name: Upgrading pip | |
| # run: pip install --upgrade pip | |
| # - name: Install deps | |
| # run: pip install cython numpy==1.26 | |
| - name: Installing package | |
| run: pip install -e . | |
| # Some git-based dependencies (e.g., ophys-nway-matching) in requirements.txt | |
| # are not reliably installed via `pip install -e .` due to setuptools limitations. | |
| # This second install ensures all such dependencies are properly installed. | |
| - name: Installing packages again (to avoid setuptools limitations) | |
| run: pip install -r requirements.txt | |
| - name: Installing build dependencies | |
| run: | | |
| pip install markupsafe==2.0.1 | |
| pip install jupyter==1.0.0 | |
| pip install -U jupyter-book==1.0.0 | |
| pip install nbmake==1.5.3 | |
| pip install pytest-xdist==3.5.0 | |
| - name: Printing environment | |
| run: pip freeze | |
| - name: Testing Embargoed Notebooks | |
| run: | | |
| pytest --nbmake --nbmake-timeout=8000 -n=auto "./docs/embargoed" | |
| rm ./docs/embargoed/*.nwb | |
| - name: Testing Higher-Order Notebooks | |
| run: | | |
| pytest --nbmake --nbmake-timeout=8000 -n=auto "./docs/higher-order" --ignore docs/higher-order/behavioral_state.ipynb | |
| rm ./docs/higher-order/*.nwb | |
| - name: Testing Basics Notebooks | |
| run: | | |
| pytest --nbmake --nbmake-timeout=100000 -n=auto "./docs/basics" | |
| rm ./docs/basics/*.nwb | |
| - name: Testing Visualization Notebooks | |
| run: | | |
| pytest --nbmake --nbmake-timeout=8000 -n=auto "./docs/visualization" | |
| rm ./docs/visualization/*.nwb | |
| - name: Testing First-Order Notebooks | |
| run: | | |
| pytest --nbmake --nbmake-timeout=8000 -n=auto "./docs/first-order" | |
| rm ./docs/first-order/*.nwb | |
| - name: Testing Project Notebooks | |
| run: | | |
| pytest --nbmake --nbmake-timeout=8000 -n=auto "./docs/projects" | |
| rm ./docs/projects/*.nwb | |
| - name: Printing log | |
| run: | | |
| git config --global --add safe.directory /__w/openscope_databook/openscope_databook | |
| git status | |
| - name: Printing shortlog | |
| run: git log | git shortlog -sn | |
| - name: Build Jupyter book | |
| run: | | |
| jupyter-book clean ./docs | |
| jupyter-book build ./docs |