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@AllenInstitute

Allen Institute

Please visit http://alleninstitute.github.io/ for more information.

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  1. AllenSDK AllenSDK Public

    code for reading and processing Allen Institute for Brain Science data

    Jupyter Notebook 363 154

  2. dipde dipde Public

    Numerical solver for coupled population density equations

    Python 24 14

Repositories

Showing 10 of 430 repositories
  • bmtk Public

    Brain Modeling Toolkit

    AllenInstitute/bmtk’s past year of commit activity
    Python 289 BSD-3-Clause 93 61 9 Updated Jul 6, 2025
  • MIES Public

    Multichannel Igor Electrophysiology Suite

    AllenInstitute/MIES’s past year of commit activity
    IGOR Pro 28 9 277 18 Updated Jul 4, 2025
  • deep-neurographs Public

    A Python package that corrects split mistakes in a fragmented neuron segmentation using a graph neural network.

    AllenInstitute/deep-neurographs’s past year of commit activity
    Python 6 MIT 0 0 0 Updated Jul 4, 2025
  • dynamic_routing_analysis Public

    Tools for accessing, processing and presenting data from Dynamic Routing experiments.

    AllenInstitute/dynamic_routing_analysis’s past year of commit activity
    Jupyter Notebook 2 0 0 0 Updated Jul 3, 2025
  • PeakRankR Public

    Package to rank enhancer peaks for cloning

    AllenInstitute/PeakRankR’s past year of commit activity
    R 1 0 0 0 Updated Jul 3, 2025
  • cell_type_mapper Public

    Repository for storing prototype functionality implementations for the BKP

    AllenInstitute/cell_type_mapper’s past year of commit activity
    Python 29 5 5 2 Updated Jul 3, 2025
  • biofile-finder Public

    An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, and direct viewing in common industry applications or in our web-based 3D Volume Viewer.

    AllenInstitute/biofile-finder’s past year of commit activity
    TypeScript 12 BSD-3-Clause 3 68 2 Updated Jul 2, 2025
  • aibs-informatics-core Public

    Core library to be used as foundation across multiple projects

    AllenInstitute/aibs-informatics-core’s past year of commit activity
    Python 2 0 0 1 Updated Jul 2, 2025
  • vis Public

    Typescript packages for building big-data visualization tools & components, with examples for a variety of common data types & formats

    AllenInstitute/vis’s past year of commit activity
    TypeScript 5 BSD-3-Clause 1 11 6 Updated Jul 2, 2025
  • abc_atlas_access Public

    Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas

    AllenInstitute/abc_atlas_access’s past year of commit activity
    Jupyter Notebook 76 28 18 6 Updated Jul 1, 2025