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Achievement: Pull SharkAchievement: Arctic Code Vault Contributor

Achievements

Achievement: Pull SharkAchievement: Arctic Code Vault Contributor

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@barsnes-group

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yehiafarag/README.md

👋 Hi, I'm Yehia Mokhtar Farag

Welcome to my GitHub profile! I'm passionate about software development and scientific computing, with a focus on bioinformatics and data science.

🚀 Main Projects

Here are some of my featured repositories:

  • QuickSearchProt:
    Automatic selection of search parameter values for mass spectrometry-based search engines.

  • SegmentFunction:
    A lightweight Python tool for segment overlap analysis, Pearson correlation calculation, and mean computation on genomics data.

  • PeptideShaker Online:
    A user-friendly web-based framework for MS-based proteomics data identification, featuring a Galaxy backend and web application frontend.

  • CSF Proteome Resource (CSF-PR):
    An online repository for mass spectrometry-based CSF proteomics data, supporting biomarker research in neurological diseases.

  • DIVA Omics (Demo):
    An interactive, web-based visual analysis system for quantitative omics data—simple to use, no advanced bioinformatics required.

  • Spectra EV:
    A lightweight tool for evaluating the identifiability of MS/MS spectra, helping researchers assess dataset identification rates in proteomics.

📫 Get in Touch

Feel free to explore my projects or reach out for collaboration!

Pinned Loading

  1. diva-omics-demo diva-omics-demo Public

    DiVA Web Page

    Java

  2. spectra-ev spectra-ev Public

    Java

  3. barsnes-group/peptide-shaker-online barsnes-group/peptide-shaker-online Public

    Web-based framework for interactive visual analysis of proteomics data

    JavaScript 7 2

  4. barsnes-group/csf-pr barsnes-group/csf-pr Public

    CSF Proteome Resource is an online repository of mass spectrometry based proteomics experiments on human cerebrospinal fluid (CSF).

    Java

  5. barsnes-group/csf-pr-1.0 barsnes-group/csf-pr-1.0 Public

    CSF Proteome Resource is an online repository of identification mass spectrometry based proteomics experiments on human cerebrospinal fluid (CSF).

    Java

  6. barsnes-group/QuickSearchProt barsnes-group/QuickSearchProt Public

    Java