Dev

[nomis-c]

No description provided.

[xin-huang]

please use https://github.com/snakemake/snakefmt to format Snakemake files

[xin-huang]

It seems the current test relies on a dry-run. To create more reliable and meaningful unit tests, please refer to https://snakemake.readthedocs.io/en/stable/snakefiles/testing.html

[xin-huang]

These dry-run tests should be retained.

[xin-huang]

For documentation reference, you can check this example: https://snakemake.github.io/snakemake-workflow-catalog/docs/workflows/snakemake-workflows/rna-seq-star-deseq2.html

[xin-huang]

Please revise the scripts in the scripts folder to accept parameters via Snakemake variables rather than command-line arguments.

[xin-huang]

https://snakemake.readthedocs.io/en/stable/snakefiles/best_practices.html

[xin-huang]

https://snakedeploy.readthedocs.io/en/stable/

[xin-huang]

Please also fix the empty frequency spectrum generated from dadi

[xin-huang]

https://dockstore.org/