Skip to content

Navigation Menu

Appearance settings

vib-singlecell-nf

Explore
By company size
By use case
By industry
View all solutions
Topics
- AI
- DevOps
- Security
- Software Development
- View all
Explore
- GitHub Sponsors
  Fund open source developers
- The ReadME Project
  GitHub community articles
Repositories
- Enterprise platform
  AI-powered developer platform
Available add-ons
Pricing

Search code, repositories, users, issues, pull requests...

Search

Clear

Search syntax tips

Provide feedback

We read every piece of feedback, and take your input very seriously.

Include my email address so I can be contacted

Saved searches

Use saved searches to filter your results more quickly

Name

Query

To see all available qualifiers, see our documentation.

Appearance settings

You signed in with another tab or window. Reload to refresh your session. You signed out in another tab or window. Reload to refresh your session. You switched accounts on another tab or window. Reload to refresh your session.

Dismiss alert

VIB-SingleCell-NF

Pipelines for single-cell data in Nextflow DSL2. Developed and maintained by the Stein Aerts lab, Yvan Saeys lab, and Janssen Pharmaceutica.

18 followers
https://aertslab.org/
vib.singlecell.nf@gmail.com

Overview
Repositories
Projects
Packages
People

More

Overview
Repositories
Projects
Packages
People

Pinned Loading

vsn-pipelines vsn-pipelines Public archive

A repository of pipelines for single-cell data in Nextflow DSL2

Nextflow 75 35
vsn-pipelines-examples vsn-pipelines-examples Public

Configs and results for example data

4

Repositories

Loading

Type

Select type

All Public Sources Forks Archived Mirrors Templates

Language

Select language

All Dockerfile Nextflow Python R

Sort

Select order

Last updated Name Stars

Showing 10 of 31 repositories

vsn-pipelines Public archive
A repository of pipelines for single-cell data in Nextflow DSL2

vib-singlecell-nf/vsn-pipelines’s past year of commit activity

Nextflow 75 GPL-3.0 35 62 13 Updated Apr 19, 2023
vsn-pipelines-examples Public
Configs and results for example data

vib-singlecell-nf/vsn-pipelines-examples’s past year of commit activity

4 GPL-3.0 0 0 0 Updated Aug 25, 2021
template Public template
A template repository for adding new tools to VIB-SingleCell-NF

vib-singlecell-nf/template’s past year of commit activity

Nextflow 1 GPL-3.0 0 0 0 Updated Jan 19, 2021
trimgalore Public archive
A repository for the Trim Galore module of the vib-singlecell-nf pipeline

vib-singlecell-nf/trimgalore’s past year of commit activity

Nextflow 0 0 0 0 Updated Dec 8, 2020
star Public archive
A repository for the star module of the vib-singlecell-nf pipeline

vib-singlecell-nf/star’s past year of commit activity

Nextflow 0 0 0 0 Updated Dec 8, 2020
sratoolkit Public archive
A repository for the sratoolkit module of the vib-singlecell-nf pipeline

vib-singlecell-nf/sratoolkit’s past year of commit activity

Nextflow 0 0 0 0 Updated Dec 8, 2020
soupx Public archive
A repository for the soupx module of the vib-singlecell-nf pipeline

vib-singlecell-nf/soupx’s past year of commit activity

Nextflow 0 0 0 0 Updated Dec 8, 2020
sinto Public archive
A repository for the Sinto module of the vib-singlecell-nf pipeline

vib-singlecell-nf/sinto’s past year of commit activity

Nextflow 0 0 0 0 Updated Dec 8, 2020
singlecelltoolkit Public archive
A repository for the single_cell_toolkit module of the vib-singlecell-nf pipeline

vib-singlecell-nf/singlecelltoolkit’s past year of commit activity

Dockerfile 0 0 0 0 Updated Dec 8, 2020
scrublet Public archive
A repository for the scrublet module of the vib-singlecell-nf pipeline

vib-singlecell-nf/scrublet’s past year of commit activity

Nextflow 1 1 0 0 Updated Dec 8, 2020

View all repositories

People

Top languages

Loading…

Uh oh!

There was an error while loading. Please reload this page.

Most used topics

Loading…

Uh oh!

There was an error while loading. Please reload this page.

Footer

© 2025 GitHub, Inc.

Footer navigation

Terms
Privacy
Security
Status
Docs
Contact

You can’t perform that action at this time.