!!! SOS
is still a WIP. Please be mindful that there are paths that require the user to manually change. !!!
SimOutbreakSelection
or SOS
relies on SLiM
(3.3.1) , python (3.7.12), and R (4.2.2).
Crucially SOS
uses the following modules within python to handle SLiM
tree sequence outputs:
tskit
(0.2.3)msprime
(0.7.4)pyslim
(0.403)
An appropriate environment can be installed using conda or micromamba. Micromamba is highly recommended.
# Create a conda environment
micromamba env create -f environment.yml
Our preprint is available on BioRxiv.
Documentation for SOS
can be found here at the SimOutbreakSelection wiki.
Distributed under the GNU General Public License v3.0. See the LICENSE file for more information.