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v0.9.0 – Scyther

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@muffato muffato released this 03 Oct 12:20
0.9.0
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[0.9.0] – Scyther – [2025-10-03]

Enhancements & fixes

  • Upgrade Busco (#190)
  • The pipeline now stops on Busco failures (#194)
  • Update resource requirements for BLASTN modules (#191) and BLOBTOOLKIT_WINDOWSTATS
  • Fixed the test_full profile (Sanger only)
  • Addition of --tmpdir to Diamond blast modules (#200)
  • --use_work_dir_as_temp is no longer a hidden param.
  • Fixed some documentation (#193 and #197)
  • Made GENERATE_CONFIG more resilient to network errors (#197)

Software dependencies

Note, since the pipeline is using Nextflow DSL2, each process will be run with its own Biocontainer. This means that on occasion it is entirely possible for the pipeline to be using different versions of the same tool. However, the overall software dependency changes compared to the last release have been listed below for reference. Only Docker or Singularity containers are supported, conda is not supported.

Dependency Old version New version
busco 5.8.3 6.0.0
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