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A lightweight Python package for loading, representing, and efficiently querying biological ontologies as graph structures.

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saezlab/ontograph

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OntoGraph Package

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Description

A lightweight Python package for loading, representing, and efficiently querying biological ontologies as graph structures.

Installation

  • TODO: Add installation instructions for your project, if applicable.
# Example
pip install <name-of-my-project>

Usage

  • TODO: Add usage instructions for your project.
import foobar

# returns 'words'
foobar.pluralize("word")

# returns 'geese'
foobar.pluralize("goose")

# returns 'phenomenon'
foobar.singularize("phenomena")

Contributing

Pull requests are welcome. For major changes, please open an issue first to discuss what you would like to change.

Please make sure to update tests as appropriate.

  • TODO: add contribution guidelines. All of them can be modified in the mkdocs documentation (./docs/community)

License

MIT

  • TODO: Modify this based on the license you choose.
  • TODO: Modify the LICENSE file based on the license you choose.

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A lightweight Python package for loading, representing, and efficiently querying biological ontologies as graph structures.

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