web

nbproject/ant-deploy.xml

@@ -1,4 +1,43 @@
 <?xml version="1.0" encoding="UTF-8"?>
+<!--
+DO NOT ALTER OR REMOVE COPYRIGHT NOTICES OR THIS HEADER.
+
+Copyright (c) 2008, 2016 Oracle and/or its affiliates. All rights reserved.
+
+Oracle and Java are registered trademarks of Oracle and/or its affiliates.
+Other names may be trademarks of their respective owners.
+
+The contents of this file are subject to the terms of either the GNU
+General Public License Version 2 only ("GPL") or the Common
+Development and Distribution License("CDDL") (collectively, the
+"License"). You may not use this file except in compliance with the
+License. You can obtain a copy of the License at
+http://www.netbeans.org/cddl-gplv2.html
+or nbbuild/licenses/CDDL-GPL-2-CP. See the License for the
+specific language governing permissions and limitations under the
+License.  When distributing the software, include this License Header
+Notice in each file and include the License file at
+nbbuild/licenses/CDDL-GPL-2-CP.  Oracle designates this
+particular file as subject to the "Classpath" exception as provided
+by Oracle in the GPL Version 2 section of the License file that
+accompanied this code. If applicable, add the following below the
+License Header, with the fields enclosed by brackets [] replaced by
+your own identifying information:
+"Portions Copyrighted [year] [name of copyright owner]"
+
+If you wish your version of this file to be governed by only the CDDL
+or only the GPL Version 2, indicate your decision by adding
+"[Contributor] elects to include this software in this distribution
+under the [CDDL or GPL Version 2] license." If you do not indicate a
+single choice of license, a recipient has the option to distribute
+your version of this file under either the CDDL, the GPL Version 2 or
+to extend the choice of license to its licensees as provided above.
+However, if you add GPL Version 2 code and therefore, elected the GPL
+Version 2 license, then the option applies only if the new code is
+made subject to such option by the copyright holder.
+
+Contributor(s):
+-->
 <project default="-deploy-ant" basedir=".">
     <target name="-init-cl-deployment-env" if="deploy.ant.enabled">
         <property file="${deploy.ant.properties.file}" />
@@ -8,7 +47,7 @@
         <tempfile prefix="gfv3" property="gfv3.password.file" destdir="${java.io.tmpdir}"/>  <!-- do not forget to delete this! -->
         <echo message="AS_ADMIN_PASSWORD=${gfv3.password}" file="${gfv3.password.file}"/>
     </target>
-    
+
     <target name="-parse-sun-web" depends="-init-cl-deployment-env" if="sun.web.present">
         <tempfile prefix="gfv3" property="temp.sun.web" destdir="${java.io.tmpdir}"/>
         <copy file="${deploy.ant.docbase.dir}/WEB-INF/sun-web.xml" tofile="${temp.sun.web}"/>

nbproject/private/private.properties

@@ -1,10 +1,10 @@
-deploy.ant.properties.file=/Users/atsuko/Library/Application Support/NetBeans/8.0.1/config/GlassFishEE6/Properties/gfv3-56699696.properties
-j2ee.platform.is.jsr109=true
-j2ee.server.domain=/Users/atsuko/src/glassfish/glassfish/domains/domain1
-j2ee.server.home=/Users/atsuko/src/glassfish/glassfish
-j2ee.server.instance=[/Users/atsuko/src/glassfish/glassfish:/Users/atsuko/src/glassfish/glassfish/domains/domain1]deployer:gfv3ee6wc:localhost:4848
-j2ee.server.middleware=/Users/atsuko/src/glassfish
-javac.debug=true
-javadoc.preview=true
-selected.browser=default
-user.properties.file=/Users/atsuko/Library/Application Support/NetBeans/8.0.1/build.properties
+deploy.ant.properties.file=C:\\Users\\xinfang\\AppData\\Roaming\\NetBeans\\8.2\\config\\GlassFishEE6\\Properties\\gfv3-406409272.properties
+j2ee.platform.is.jsr109=true
+j2ee.server.domain=C:/Users/xinfang/AppData/Roaming/NetBeans/8.2/config/GF_4.1.1/domain1
+j2ee.server.home=C:/Program Files/glassfish-4.1.1/glassfish
+j2ee.server.instance=[C:\\Program Files\\glassfish-4.1.1\\glassfish;C:\\Program Files\\glassfish-4.1.1\\glassfish\\domains\\domain1]deployer:gfv3ee6wc:localhost:4848
+j2ee.server.middleware=C:/Program Files/glassfish-4.1.1
+javac.debug=true
+javadoc.preview=true
+selected.browser=default
+user.properties.file=C:\\Users\\xinfang\\AppData\\Roaming\\NetBeans\\8.2\\build.properties

nbproject/private/private.xml

@@ -1,11 +1,7 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<project-private xmlns="http://www.netbeans.org/ns/project-private/1">
-    <editor-bookmarks xmlns="http://www.netbeans.org/ns/editor-bookmarks/2" lastBookmarkId="0"/>
-    <open-files xmlns="http://www.netbeans.org/ns/projectui-open-files/2">
-        <group>
-            <file>file:/Users/atsuko/src/git/DynaJoin/src/java/jp/dbcls/federated/SPARQLService.java</file>
-            <file>file:/Users/atsuko/src/git/DynaJoin/src/java/jp/dbcls/federated/QueryServlet.java</file>
-            <file>file:/Users/atsuko/src/git/DynaJoin/src/java/com/fluidops/fedx/evaluation/SparqlTripleSource.java</file>
-        </group>
-    </open-files>
-</project-private>
+<?xml version="1.0" encoding="UTF-8"?>
+<project-private xmlns="http://www.netbeans.org/ns/project-private/1">
+    <editor-bookmarks xmlns="http://www.netbeans.org/ns/editor-bookmarks/2" lastBookmarkId="0"/>
+    <open-files xmlns="http://www.netbeans.org/ns/projectui-open-files/2">
+        <group/>
+    </open-files>
+</project-private>

nbproject/project.properties

@@ -1,115 +1,115 @@
-annotation.processing.enabled=true
-annotation.processing.enabled.in.editor=true
-annotation.processing.processors.list=
-annotation.processing.run.all.processors=true
-annotation.processing.source.output=${build.generated.sources.dir}/ap-source-output
-auxiliary.org-netbeans-modules-css-prep.less_2e_compiler_2e_options=
-auxiliary.org-netbeans-modules-css-prep.less_2e_enabled=false
-auxiliary.org-netbeans-modules-css-prep.less_2e_mappings=/less:/css
-auxiliary.org-netbeans-modules-css-prep.sass_2e_compiler_2e_options=
-auxiliary.org-netbeans-modules-css-prep.sass_2e_enabled=false
-auxiliary.org-netbeans-modules-css-prep.sass_2e_mappings=/scss:/css
-auxiliary.org-netbeans-modules-web-clientproject-api.js_2e_libs_2e_folder=js/libs
-build.classes.dir=${build.web.dir}/WEB-INF/classes
-build.classes.excludes=**/*.java,**/*.form
-build.dir=build
-build.generated.dir=${build.dir}/generated
-build.generated.sources.dir=${build.dir}/generated-sources
-build.test.classes.dir=${build.dir}/test/classes
-build.test.results.dir=${build.dir}/test/results
-build.web.dir=${build.dir}/web
-build.web.excludes=${build.classes.excludes}
-client.urlPart=
-compile.jsps=false
-conf.dir=${source.root}/conf
-debug.classpath=${build.classes.dir}:${javac.classpath}
-debug.test.classpath=\
-    ${run.test.classpath}
-display.browser=true
-# Files to be excluded from distribution war
-dist.archive.excludes=
-dist.dir=dist
-dist.ear.war=${dist.dir}/${war.ear.name}
-dist.javadoc.dir=${dist.dir}/javadoc
-dist.war=${dist.dir}/${war.name}
-endorsed.classpath=\
-    ${libs.javaee-endorsed-api-6.0.classpath}
-excludes=
-file.reference.commons-codec-1.4.jar=lib/commons-codec-1.4.jar
-file.reference.commons-compress-1.1.jar=lib/commons-compress-1.1.jar
-file.reference.commons-httpclient-3.1.jar=lib/commons-httpclient-3.1.jar
-file.reference.commons-io-2.1.jar=lib/commons-io-2.1.jar
-file.reference.commons-logging-1.1.1.jar=lib/commons-logging-1.1.1.jar
-file.reference.jackson-core-2.1.4.jar=lib/jackson-core-2.1.4.jar
-file.reference.log4j-1.2.16.jar=lib/log4j-1.2.16.jar
-file.reference.openrdf-sesame-2.7.3-onejar.jar=lib/openrdf-sesame-2.7.3-onejar.jar
-file.reference.slf4j-api-1.5.2.jar=lib/slf4j-api-1.5.2.jar
-file.reference.slf4j-log4j12-1.5.2.jar=lib/slf4j-log4j12-1.5.2.jar
-includes=**
-j2ee.compile.on.save=true
-j2ee.copy.static.files.on.save=true
-j2ee.deploy.on.save=true
-j2ee.platform=1.7-web
-j2ee.platform.classpath=${j2ee.server.home}/modules/endorsed/javax.annotation-api.jar:${j2ee.server.home}/modules/endorsed/jaxb-api.jar:${j2ee.server.home}/modules/endorsed/webservices-api-osgi.jar:${j2ee.server.home}/modules/bean-validator.jar:${j2ee.server.home}/modules/javax.batch-api.jar:${j2ee.server.home}/modules/javax.ejb-api.jar:${j2ee.server.home}/modules/javax.el.jar:${j2ee.server.home}/modules/javax.enterprise.concurrent-api.jar:${j2ee.server.home}/modules/javax.enterprise.concurrent.jar:${j2ee.server.home}/modules/javax.enterprise.deploy-api.jar:${j2ee.server.home}/modules/javax.faces.jar:${j2ee.server.home}/modules/javax.inject.jar:${j2ee.server.home}/modules/javax.interceptor-api.jar:${j2ee.server.home}/modules/javax.jms-api.jar:${j2ee.server.home}/modules/javax.json.jar:${j2ee.server.home}/modules/javax.mail.jar:${j2ee.server.home}/modules/javax.management.j2ee-api.jar:${j2ee.server.home}/modules/javax.persistence.jar:${j2ee.server.home}/modules/javax.resource-api.jar:${j2ee.server.home}/modules/javax.security.auth.message-api.jar:${j2ee.server.home}/modules/javax.security.jacc-api.jar:${j2ee.server.home}/modules/javax.servlet-api.jar:${j2ee.server.home}/modules/javax.servlet.jsp-api.jar:${j2ee.server.home}/modules/javax.servlet.jsp.jar:${j2ee.server.home}/modules/javax.servlet.jsp.jstl-api.jar:${j2ee.server.home}/modules/javax.servlet.jsp.jstl.jar:${j2ee.server.home}/modules/javax.transaction-api.jar:${j2ee.server.home}/modules/javax.websocket-api.jar:${j2ee.server.home}/modules/javax.ws.rs-api.jar:${j2ee.server.home}/modules/javax.xml.registry-api.jar:${j2ee.server.home}/modules/javax.xml.rpc-api.jar:${j2ee.server.home}/modules/jaxb-osgi.jar:${j2ee.server.home}/modules/webservices-osgi.jar:${j2ee.server.home}/modules/weld-osgi-bundle.jar:${j2ee.server.middleware}/mq/lib/jaxm-api.jar
-j2ee.platform.embeddableejb.classpath=${j2ee.server.home}/lib/embedded/glassfish-embedded-static-shell.jar
-j2ee.platform.wscompile.classpath=${j2ee.server.home}/modules/webservices-osgi.jar
-j2ee.platform.wsgen.classpath=${j2ee.server.home}/modules/webservices-osgi.jar:${j2ee.server.home}/modules/endorsed/webservices-api-osgi.jar:${j2ee.server.home}/modules/jaxb-osgi.jar:${j2ee.server.home}/modules/endorsed/jaxb-api.jar
-j2ee.platform.wsimport.classpath=${j2ee.server.home}/modules/webservices-osgi.jar:${j2ee.server.home}/modules/endorsed/webservices-api-osgi.jar:${j2ee.server.home}/modules/jaxb-osgi.jar:${j2ee.server.home}/modules/endorsed/jaxb-api.jar
-j2ee.platform.wsit.classpath=
-j2ee.server.type=gfv3ee6
-jar.compress=false
-javac.classpath=\
-    ${file.reference.commons-codec-1.4.jar}:\
-    ${file.reference.commons-compress-1.1.jar}:\
-    ${file.reference.commons-httpclient-3.1.jar}:\
-    ${file.reference.commons-io-2.1.jar}:\
-    ${file.reference.commons-logging-1.1.1.jar}:\
-    ${file.reference.jackson-core-2.1.4.jar}:\
-    ${file.reference.log4j-1.2.16.jar}:\
-    ${file.reference.slf4j-api-1.5.2.jar}:\
-    ${file.reference.slf4j-log4j12-1.5.2.jar}:\
-    ${file.reference.openrdf-sesame-2.7.3-onejar.jar}
-# Space-separated list of extra javac options
-javac.compilerargs=
-javac.debug=true
-javac.deprecation=false
-javac.processorpath=\
-    ${javac.classpath}
-javac.source=1.7
-javac.target=1.7
-javac.test.classpath=\
-    ${javac.classpath}:\
-    ${build.classes.dir}
-javac.test.processorpath=\
-    ${javac.test.classpath}
-javadoc.additionalparam=
-javadoc.author=false
-javadoc.encoding=${source.encoding}
-javadoc.noindex=false
-javadoc.nonavbar=false
-javadoc.notree=false
-javadoc.preview=true
-javadoc.private=false
-javadoc.splitindex=true
-javadoc.use=true
-javadoc.version=false
-javadoc.windowtitle=
-lib.dir=${web.docbase.dir}/WEB-INF/lib
-persistence.xml.dir=${conf.dir}
-platform.active=default_platform
-resource.dir=setup
-run.test.classpath=\
-    ${javac.test.classpath}:\
-    ${build.test.classes.dir}
-# Space-separated list of JVM arguments used when running a class with a main method or a unit test
-# (you may also define separate properties like run-sys-prop.name=value instead of -Dname=value):
-runmain.jvmargs=
-source.encoding=UTF-8
-source.root=src
-src.dir=${source.root}/java
-test.src.dir=test
-war.content.additional=
-war.ear.name=${war.name}
-war.name=DynaJoin.war
-web.docbase.dir=web
-webinf.dir=web/WEB-INF
+annotation.processing.enabled=true
+annotation.processing.enabled.in.editor=true
+annotation.processing.processors.list=
+annotation.processing.run.all.processors=true
+annotation.processing.source.output=${build.generated.sources.dir}/ap-source-output
+auxiliary.org-netbeans-modules-css-prep.less_2e_compiler_2e_options=
+auxiliary.org-netbeans-modules-css-prep.less_2e_enabled=false
+auxiliary.org-netbeans-modules-css-prep.less_2e_mappings=/less:/css
+auxiliary.org-netbeans-modules-css-prep.sass_2e_compiler_2e_options=
+auxiliary.org-netbeans-modules-css-prep.sass_2e_enabled=false
+auxiliary.org-netbeans-modules-css-prep.sass_2e_mappings=/scss:/css
+auxiliary.org-netbeans-modules-web-clientproject-api.js_2e_libs_2e_folder=js/libs
+build.classes.dir=${build.web.dir}/WEB-INF/classes
+build.classes.excludes=**/*.java,**/*.form
+build.dir=build
+build.generated.dir=${build.dir}/generated
+build.generated.sources.dir=${build.dir}/generated-sources
+build.test.classes.dir=${build.dir}/test/classes
+build.test.results.dir=${build.dir}/test/results
+build.web.dir=${build.dir}/web
+build.web.excludes=${build.classes.excludes}
+client.urlPart=
+compile.jsps=false
+conf.dir=${source.root}/conf
+debug.classpath=${build.classes.dir}:${javac.classpath}
+debug.test.classpath=\
+    ${run.test.classpath}
+display.browser=true
+# Files to be excluded from distribution war
+dist.archive.excludes=
+dist.dir=dist
+dist.ear.war=${dist.dir}/${war.ear.name}
+dist.javadoc.dir=${dist.dir}/javadoc
+dist.war=${dist.dir}/${war.name}
+endorsed.classpath=\
+    ${libs.javaee-endorsed-api-6.0.classpath}
+excludes=
+file.reference.commons-codec-1.4.jar=lib/commons-codec-1.4.jar
+file.reference.commons-compress-1.1.jar=lib/commons-compress-1.1.jar
+file.reference.commons-httpclient-3.1.jar=lib/commons-httpclient-3.1.jar
+file.reference.commons-io-2.1.jar=lib/commons-io-2.1.jar
+file.reference.commons-logging-1.1.1.jar=lib/commons-logging-1.1.1.jar
+file.reference.jackson-core-2.1.4.jar=lib/jackson-core-2.1.4.jar
+file.reference.log4j-1.2.16.jar=lib/log4j-1.2.16.jar
+file.reference.openrdf-sesame-2.7.3-onejar.jar=lib/openrdf-sesame-2.7.3-onejar.jar
+file.reference.slf4j-api-1.5.2.jar=lib/slf4j-api-1.5.2.jar
+file.reference.slf4j-log4j12-1.5.2.jar=lib/slf4j-log4j12-1.5.2.jar
+includes=**
+j2ee.compile.on.save=true
+j2ee.copy.static.files.on.save=true
+j2ee.deploy.on.save=true
+j2ee.platform=1.7-web
+j2ee.platform.classpath=${j2ee.server.home}/modules/endorsed/javax.annotation-api.jar:${j2ee.server.home}/modules/endorsed/jaxb-api.jar:${j2ee.server.home}/modules/endorsed/webservices-api-osgi.jar:${j2ee.server.home}/modules/bean-validator.jar:${j2ee.server.home}/modules/cdi-api.jar:${j2ee.server.home}/modules/javax.batch-api.jar:${j2ee.server.home}/modules/javax.ejb-api.jar:${j2ee.server.home}/modules/javax.el.jar:${j2ee.server.home}/modules/javax.enterprise.concurrent-api.jar:${j2ee.server.home}/modules/javax.enterprise.concurrent.jar:${j2ee.server.home}/modules/javax.enterprise.deploy-api.jar:${j2ee.server.home}/modules/javax.faces.jar:${j2ee.server.home}/modules/javax.inject.jar:${j2ee.server.home}/modules/javax.interceptor-api.jar:${j2ee.server.home}/modules/javax.jms-api.jar:${j2ee.server.home}/modules/javax.json.jar:${j2ee.server.home}/modules/javax.mail.jar:${j2ee.server.home}/modules/javax.management.j2ee-api.jar:${j2ee.server.home}/modules/javax.persistence.jar:${j2ee.server.home}/modules/javax.resource-api.jar:${j2ee.server.home}/modules/javax.security.auth.message-api.jar:${j2ee.server.home}/modules/javax.security.jacc-api.jar:${j2ee.server.home}/modules/javax.servlet-api.jar:${j2ee.server.home}/modules/javax.servlet.jsp-api.jar:${j2ee.server.home}/modules/javax.servlet.jsp.jar:${j2ee.server.home}/modules/javax.servlet.jsp.jstl-api.jar:${j2ee.server.home}/modules/javax.servlet.jsp.jstl.jar:${j2ee.server.home}/modules/javax.transaction-api.jar:${j2ee.server.home}/modules/javax.websocket-api.jar:${j2ee.server.home}/modules/javax.ws.rs-api.jar:${j2ee.server.home}/modules/javax.xml.registry-api.jar:${j2ee.server.home}/modules/javax.xml.rpc-api.jar:${j2ee.server.home}/modules/jaxb-osgi.jar:${j2ee.server.home}/modules/webservices-osgi.jar:${j2ee.server.home}/modules/weld-osgi-bundle.jar:${j2ee.server.middleware}/mq/lib/jaxm-api.jar
+j2ee.platform.embeddableejb.classpath=${j2ee.server.home}/lib/embedded/glassfish-embedded-static-shell.jar
+j2ee.platform.wscompile.classpath=${j2ee.server.home}/modules/webservices-osgi.jar
+j2ee.platform.wsgen.classpath=${j2ee.server.home}/modules/webservices-osgi.jar:${j2ee.server.home}/modules/endorsed/webservices-api-osgi.jar:${j2ee.server.home}/modules/jaxb-osgi.jar:${j2ee.server.home}/modules/endorsed/jaxb-api.jar
+j2ee.platform.wsimport.classpath=${j2ee.server.home}/modules/webservices-osgi.jar:${j2ee.server.home}/modules/endorsed/webservices-api-osgi.jar:${j2ee.server.home}/modules/jaxb-osgi.jar:${j2ee.server.home}/modules/endorsed/jaxb-api.jar
+j2ee.platform.wsit.classpath=
+j2ee.server.type=gfv3ee6
+jar.compress=false
+javac.classpath=\
+    ${file.reference.commons-codec-1.4.jar}:\
+    ${file.reference.commons-compress-1.1.jar}:\
+    ${file.reference.commons-httpclient-3.1.jar}:\
+    ${file.reference.commons-io-2.1.jar}:\
+    ${file.reference.commons-logging-1.1.1.jar}:\
+    ${file.reference.jackson-core-2.1.4.jar}:\
+    ${file.reference.log4j-1.2.16.jar}:\
+    ${file.reference.slf4j-api-1.5.2.jar}:\
+    ${file.reference.slf4j-log4j12-1.5.2.jar}:\
+    ${file.reference.openrdf-sesame-2.7.3-onejar.jar}
+# Space-separated list of extra javac options
+javac.compilerargs=
+javac.debug=true
+javac.deprecation=false
+javac.processorpath=\
+    ${javac.classpath}
+javac.source=1.7
+javac.target=1.7
+javac.test.classpath=\
+    ${javac.classpath}:\
+    ${build.classes.dir}
+javac.test.processorpath=\
+    ${javac.test.classpath}
+javadoc.additionalparam=
+javadoc.author=false
+javadoc.encoding=${source.encoding}
+javadoc.noindex=false
+javadoc.nonavbar=false
+javadoc.notree=false
+javadoc.preview=true
+javadoc.private=false
+javadoc.splitindex=true
+javadoc.use=true
+javadoc.version=false
+javadoc.windowtitle=
+lib.dir=${web.docbase.dir}/WEB-INF/lib
+persistence.xml.dir=${conf.dir}
+platform.active=default_platform
+resource.dir=setup
+run.test.classpath=\
+    ${javac.test.classpath}:\
+    ${build.test.classes.dir}
+# Space-separated list of JVM arguments used when running a class with a main method or a unit test
+# (you may also define separate properties like run-sys-prop.name=value instead of -Dname=value):
+runmain.jvmargs=
+source.encoding=UTF-8
+source.root=src
+src.dir=${source.root}/java
+test.src.dir=test
+war.content.additional=
+war.ear.name=${war.name}
+war.name=DynaJoin.war
+web.docbase.dir=web
+webinf.dir=web/WEB-INF

src/java/com/fluidops/fedx/FedXConnection.java

@@ -94,8 +94,7 @@ protected CloseableIteration<? extends BindingSet, QueryEvaluationException> eva
 			try {
 				String queryString = getOriginalQueryString(bindings);
 				if (queryString==null)
-					//logger.warn("Query string is null. Please check your FedX setup.");
-                                    log.warn("Query string is null. Please check your FedX setup.");
+					logger.warn("Query string is null. Please check your FedX setup.");
 				QueryInfo queryInfo = new QueryInfo(queryString, getOriginalQueryType(bindings));
 				FederationManager.getMonitoringService().monitorQuery(queryInfo);
 				query = Optimizer.optimize(query, dataset, bindings, strategy, queryInfo);