AIMRC

Arkansas Integrated Metabolic Research Center

Welcome to the official repository of the AIMRC Data Science Core! Please visit our website for information about who we are and what we do.

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Important links

• FAQs
  Please feel free to add your own questions so we can answer them for you.
• Needs and Suggestions
  Please let us know what you need or suggest improvements.
• Our Google Drive
  Look here for data and other large files that aren't available in this repository.

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Help and support

Please contact Dr. Prateek Verma with any questions. You can email him directly or
📅 book a meeting with him here.

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Workshops

Upcoming workshops

• Datetime: TBD
  A guide to using multi-omics data in machine learning.
  Location: JBHT 239.

• Datetime: TBD
  (Repeat) Getting started with the Arkansas Research Platform: A friendly tutorial on accessing AIMRC high-performance computing resources.
  Location: JBHT 239.

• Datetime: TBD
  (Repeat) A Guide for Open-Source Deep Learning Tools and Approaches in Bioimaging.
  Location: JBHT 239.

Past workshops

Slides for past workshops are available within the workshops folder.

• Oct 2^nd, 2024 2-4 pm
  Programmatic Querying of Large (Vision) Language Models for Research.

• Aug 14, 2024 1-3 pm
  A Guide for Open-Source Deep Learning Tools and Approaches in Bioimaging.

• Jul 25, 2024 1-3 pm
  Getting started with the Arkansas Research Platform: A friendly tutorial on accessing AIMRC high-performance computing resources.

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Learning resources

YouTube Tutorials

• SSH using Putty
• Basic Linux commands
• Learn Python programming basics
• Using Google Colab
• Deep learning tutorials using Google Colab
• How to use ZeroCostDL4Mic Notebooks

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How this repository is organized

This repository contains the following directories.

1. workshops
   Each folder within corresponds to a particular category of workshops. It contains all the files that were utilized during the workshop. Most importantly, it contains the PDF file of the presentation. Large data or installation files that were downloaded during the workshop are not included. In the event that multiple workshops were conducted for the same topic, the folder will contain subfolders for each workshop. Some example files and folders within this folder are:
   • data_folder
   • workshop-slides.pdf
   • jupyter-notebook.ipynb