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Update VisCap.R #7

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Update VisCap.R #7

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2 changes: 1 addition & 1 deletion VisCap.R
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Expand Up @@ -97,7 +97,7 @@ make_matrix_from_cov_files <- function(lane_dir, cov_file_pattern, cov_field) {
load_interval_names <- function(interval_list_dir, interval_file_pattern) {
#Read interval list files and make lookup_table for genome coords and interval names
lookup = c()
filenames = list.files(interval_list_dir, full.names=TRUE, pattern=interval_file_pattern, recursive=TRUE)
filenames = list.files(interval_list_dir, full.names=TRUE, pattern=interval_file_pattern, recursive=FALSE)
for(file in filenames) {
tab = read.table(file, header=FALSE, comment.char = "@", stringsAsFactors=FALSE)
colnames(tab) <- c("chr", "start", "end", "strand", "interval_name")
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