Análisis y visualización de datos biológicos con R

Sitio web y todo el material utilizado en el curso, dictado para el Doctorado en Ciencias Biológicas, Universidad Nacional Mayor de San Marcos, Lima, Perú (06 al 13 de enero de 2025).

.
├── README.md                       # this file
├── _site.yml                       # site config
├── 01_introduccion.Rmd             # landing page for each class
├── 01_introdución/                # subfolder for each class + labs
│   ├── lab.Rmd                     # lab source file
│   ├── lab.html
│   ├── slides.Rmd                  # slides source file
│   ├── slides.html
│   └── xaringan-themer.css
├── notaR                           # codes and texts of the exercises in notaR
│   └──src                          # md and R codes for the exercises in notaR
├── Tutoriales                      # Sources and compiled files for swril tutorials
├── index.Rmd                       # home page
├── docs/                           # output folder for the site 
└── theme.css

To deploy this website locally

• Clone this repository
• Install distill, xaringanExtra:

install.packages("distill")
install.packages("xaringanExtra")

• Click on the Build Website button of the Build pane in RStudio or execute rmarkdown::render_site(encoding = 'UTF-8'). R may prompt you to install/update some extra packages.

A version of this site will be created in the docs/ subfolder. Open index.html in your web browser.

To add slides to each class

Slides are saved in each subfolder, for each class.

Xaringan slides need xaringan: install.packages("xaringan"). These are .Rmd files with a special YAML header (you can modify the YAML based on the sample slides

You can knit the slides using the knit button, pressing ctrl+shift+K in RStudio, or execute

rmarkdown::render('./[0x_topic]/slides.Rmd',  encoding = 'UTF-8')`.

Note
Remember to knit your slides and labs before building the site again. Push the .Rmd and the .html for your slides and labs, the subfolder /libs and xaringan-themer.css
Push the contents of /docs as well, Netlify will build the site from there