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@copasi COPASI

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    22 repositories

    • COPASI

      Public
      COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.
      chemistrydynamicsmodelingsystems-biologybiochemistrychemical-kineticskineticscopasisimulation
      C++
      •
      Artistic License 2.0
      •34•114•1•0•Updated Aug 10, 2025Aug 10, 2025

    • basico

      Public
      A simplified python interface to COPASI.
      pythoncopasi
      Python
      •
      Artistic License 2.0
      •6•22•9•0•Updated Jul 30, 2025Jul 30, 2025

    • denbi-modsim.github.io

      Public
      de.NBI ModSim web site
      HTML
      •1•0•0•0•Updated Jul 28, 2025Jul 28, 2025

    • python-petab-importer

      Public
      PEtab --> COPASI importer
      pythoncopasipetab
      Python
      •
      Artistic License 2.0
      •1•3•1•0•Updated Jul 27, 2025Jul 27, 2025

    • build-system

      Public
      Shell
      •
      Artistic License 2.0
      •0•0•0•0•Updated Jul 22, 2025Jul 22, 2025

    • COPASI.js

      Public
      Emscripten COPASI Javascript Bindings
      nodejscopasi
      C++
      •
      BSD 2-Clause "Simplified" License
      •0•1•1•0•Updated Jul 22, 2025Jul 22, 2025

    • copasi-dependencies

      Public
      Collection of OpenSource libraries to simplify COPASI build
      combinesbmlnumlsedmlcmakeqwtcopasimml-widget
      C++
      •3•7•0•0•Updated Jul 21, 2025Jul 21, 2025

    • copasi.github.io

      Public
      COPASI Website
      HTML
      •1•0•1•0•Updated Jun 18, 2025Jun 18, 2025

    • sbmodelr

      Public
      a tool to replicate one SBML/COPASI model into a set of replicas
      Python
      •
      Artistic License 2.0
      •2•1•0•0•Updated May 15, 2025May 15, 2025

    • python-copasi-testsuite

      Public
      Python COPASI testing
      pythontesting-toolscopasi
      Python
      •0•1•0•0•Updated May 6, 2025May 6, 2025

    • cloud-copasi

      Public
      cloud-copasi is a web service to manage COPASI simulation tasks in HPC facilities and compute clouds, such as condor, AWS, etc.
      Component Pascal
      •
      GNU General Public License v3.0
      •1•5•13•1•Updated May 20, 2024May 20, 2024

    • copasi-api

      Public
      A more general, higher level, C++ API which can also be leveraged by other programming languages.
      copasi
      C++
      •
      Artistic License 2.0
      •1•2•0•0•Updated Jun 10, 2022Jun 10, 2022

    • shinyCOPASI

      Public
      ShinyCOPASI is R-based web interface for COPASI.
      R
      •0•0•0•0•Updated Dec 23, 2021Dec 23, 2021

    • cytoscape-copasi

      Public
      Example Cytoscape 3 plugin that imports COPASI files
      Java
      •1•0•0•0•Updated Jul 12, 2021Jul 12, 2021

    • aws-lambda-copasi

      Public
      A sample project using the python-api from a AWS lambda
      Python
      •0•0•0•0•Updated Dec 4, 2020Dec 4, 2020

    • epidemic-travel-model

      Public
      Example code to automatically generate epidemic patch model (SEIR, in this case) with commuter travel events.
      Component Pascal
      •
      Apache License 2.0
      •0•4•0•0•Updated Feb 7, 2020Feb 7, 2020

    • bugzillaWebserviceHook

      Public
      A simple hook which converts push events into Bugzilla Comments
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Jun 6, 2019Jun 6, 2019

    • version-check

      Public
      PHP
      •0•0•0•0•Updated Jun 5, 2019Jun 5, 2019

    • JCMC

      Public
      JigCell Model Connector for hierarchical reaction network models
      Java
      •0•2•5•0•Updated Dec 4, 2017Dec 4, 2017

    • MSMB

      Public
      JigCell MultiState Model Builder
      Java
      •0•1•2•0•Updated May 1, 2016May 1, 2016

    • ADAM.private

      Public
      C++
      •0•0•0•0•Updated Feb 16, 2016Feb 16, 2016

    • condor-copasi

      Public
      Automatically exported from code.google.com/p/condor-copasi
      Component Pascal
      •
      Artistic License 2.0
      •1•3•2•0•Updated Apr 20, 2015Apr 20, 2015