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    53 repositories

    • subgraph_enumeration

      Public
      Motif discovery for connectomics
      Python
      •
      MIT License
      •2•5•0•0•Updated Jun 24, 2025Jun 24, 2025

    • Rhoana.github.io

      Public
      HTML
      •1•0•0•0•Updated Aug 13, 2023Aug 13, 2023

    • rh_renderer

      Public
      Rendering library
      Python
      •
      MIT License
      •5•1•0•2•Updated Jul 6, 2023Jul 6, 2023

    • rhoana2

      Public
      Rhoana pipeline version 2
      C++
      •1•3•0•10•Updated Dec 8, 2022Dec 8, 2022

    • dojo

      Public
      Distributed Proofreading of Automatic Segmentations
      Python
      •8•15•1•2•Updated Sep 30, 2022Sep 30, 2022

    • icon

      Public
      Python
      •
      MIT License
      •1•3•0•0•Updated Sep 30, 2022Sep 30, 2022

    • pyrtree

      Public
      An R-Tree implementation
      Python
      •19•37•3•2•Updated May 18, 2022May 18, 2022

    • soma_segmentation

      Public
      Code for segmenting somata in label volumes.
      Python
      •
      MIT License
      •0•0•0•0•Updated Nov 9, 2021Nov 9, 2021

    • blockbased_synapseaware

      Public
      Block-Based Synapse Aware Skeleton Generation
      Python
      •
      MIT License
      •1•3•0•0•Updated Nov 8, 2021Nov 8, 2021

    • biologicalgraphs

      Public
      Biologically-Constrained Graphs for Global Connectomics Reconstruction
      Python
      •
      MIT License
      •2•11•0•0•Updated Feb 9, 2021Feb 9, 2021

    • rhoana-website

      Public
      CSS
      •0•0•0•0•Updated Dec 16, 2020Dec 16, 2020

    • butterfly

      Public
      Documentation
      JavaScript
      •
      MIT License
      •5•2•8•1•Updated Aug 31, 2020Aug 31, 2020

    • mb

      Public
      JavaScript
      •2•0•0•0•Updated Feb 20, 2020Feb 20, 2020

    • topological_thinning

      Public
      Generate skeletons for neurological processes
      C++
      •
      MIT License
      •1•0•0•0•Updated Feb 14, 2020Feb 14, 2020

    • synapseaware

      Public
      Synapse-aware skeleton generation for neural circuits
      C++
      •
      MIT License
      •2•9•1•0•Updated Nov 21, 2019Nov 21, 2019

    • perception

      Public
      Evaluating 'Graphical Perception' with CNNs
      OpenEdge ABL
      •11•17•0•0•Updated Sep 5, 2019Sep 5, 2019

    • tinyr

      Public
      An r-tree implementation in cython
      Python
      •
      Other
      •4•3•0•0•Updated Apr 9, 2019Apr 9, 2019

    • rh_config

      Public
      Centralized, simple parameter config
      Python
      •
      MIT License
      •3•0•0•0•Updated Jan 18, 2019Jan 18, 2019

    • rh_logger

      Public
      Logging / process status / metrics reporting
      Python
      •
      MIT License
      •4•0•1•0•Updated Jan 18, 2019Jan 18, 2019

    • cloud-volume

      Public
      A client for reading and writing Neuroglancer Precomputed volumes on cloud services.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •51•0•0•0•Updated Dec 28, 2018Dec 28, 2018

    • neuroglancer

      Public
      WebGL-based viewer for volumetric data
      TypeScript
      •
      Apache License 2.0
      •325•0•0•1•Updated Aug 30, 2018Aug 30, 2018

    • 3dxp

      Public
      3D Experiments for Connectomics
      Python
      •3•2•0•0•Updated Apr 10, 2018Apr 10, 2018

    • small_stack_affine_alignment

      Public
      A fast affine only registration for a small stack
      Python
      •
      MIT License
      •1•1•0•0•Updated Feb 21, 2018Feb 21, 2018

    • MojoToolkit

      Public
      tools
      Python
      •2•0•0•0•Updated Sep 18, 2017Sep 18, 2017

    • bflyVM

      Public
      All Butterfly Middleware in one VM
      Shell
      •1•0•0•0•Updated Aug 22, 2017Aug 22, 2017

    • rhoana

      Public
      Rhoana - Dense Automated Neuron Annotation pipeline
      C
      •
      MIT License
      •14•28•0•2•Updated May 4, 2017May 4, 2017

    • icon_archived

      Public
      Jupyter Notebook
      •2•1•2•0•Updated Apr 26, 2017Apr 26, 2017

    • CudaSift

      Public
      A CUDA implementation of SIFT for NVidia GPUs
      Cuda
      •
      MIT License
      •293•0•0•0•Updated Apr 26, 2017Apr 26, 2017

    • FijiBento

      Public
      Tools for aligning very large ssEM image stacks on a compute cluster.
      Java
      •
      GNU General Public License v2.0
      •34•0•7•0•Updated Mar 23, 2017Mar 23, 2017

    • butterfly2

      Public
      Python
      •
      MIT License
      •0•0•1•0•Updated Mar 9, 2017Mar 9, 2017