Skip to content
@openworm

OpenWorm

An open-source project dedicated to creating a virtual C. elegans nematode in a computer.
README.md

OpenWorm

An open-source project dedicated to creating a virtual C. elegans nematode in a computer.

An overview of the core repositories in the project, along with the current status of automated testing, can be found here.

Pinned Loading

  1. OpenWorm OpenWorm Public

    Repository for the main Dockerfile with the OpenWorm software stack and project-wide issues

    Python 2.9k 221

  2. openworm.github.io openworm.github.io Public

    OpenWorm main website

    HTML 29 35

  3. org.geppetto org.geppetto Public

    Geppetto is an open-source platform to build web-based applications to visualize and simulate neuroscience data and models.

    Python 214 49

  4. c302 c302 Public

    The c302 framework for generating multiscale network models of C. elegans

    Python 133 28

  5. ChannelWorm2 ChannelWorm2 Public

    Tools and curated datasets to build quantitative models of C. elegans ion channels

    Jupyter Notebook 11 3

Repositories

Showing 10 of 109 repositories
  • Worm3DViewer Public

    Test repository for multiple views of the worm in 3D

    openworm/Worm3DViewer’s past year of commit activity
    Python 0 0 0 0 Updated Nov 28, 2025
  • OpenWorm Public

    Repository for the main Dockerfile with the OpenWorm software stack and project-wide issues

    openworm/OpenWorm’s past year of commit activity
    Python 2,910 MIT 221 41 2 Updated Nov 28, 2025
  • openworm.ai Public

    Scripts related to use of LLMs and other AI technology in OpenWorm

    openworm/openworm.ai’s past year of commit activity
    HTML 2 MIT 2 1 1 Updated Nov 27, 2025
  • c302 Public

    The c302 framework for generating multiscale network models of C. elegans

    openworm/c302’s past year of commit activity
    Python 133 MIT 28 8 (1 issue needs help) 1 Updated Nov 26, 2025
  • CE_locomotion Public Forked from edizquierdo/CE_locomotion

    Neuromechanical model of locomotion in C. elegans, originally developed by Eduardo Izquerdo, Erick Olivares and Randall Beer

    openworm/CE_locomotion’s past year of commit activity
    C++ 2 5 7 2 Updated Nov 22, 2025
  • WCONViewer Public

    Python based viewer for WCON files in 2D

    openworm/WCONViewer’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 20, 2025
  • ConnectomeToolbox Public

    Information on published connectomics data related to C. elegans

    openworm/ConnectomeToolbox’s past year of commit activity
    Python 3 MIT 6 2 0 Updated Nov 20, 2025
  • NicolettiEtAl2024_MN_IN Public Forked from ModelDBRepository/2017403

    C.elegans motor and interneurons (Nicoletti at al. 2024)

    openworm/NicolettiEtAl2024_MN_IN’s past year of commit activity
    Python 0 4 4 2 Updated Nov 4, 2025
  • hodgkin_huxley_tutorial Public

    A repository containing code for a number of tutorials on the Hodgkin Huxley model, including an interactive Jupyter notebook

    openworm/hodgkin_huxley_tutorial’s past year of commit activity
    Python 48 LGPL-3.0 10 6 0 Updated Oct 30, 2025
  • wormneuroatlas Public Forked from francescorandi/wormneuroatlas

    Neural signal propagation atlas (Randi et al.), genome (WormBase), single-cell transcriptome (Taylor et al.), neuropeptide/GPCR deorphanization (Beets et al.), monoaminergic connectome (Bentley et al.), and chemical-synapse sign predictions (Fenyves et al.) all in one place. Read the docs: https://francescorandi.github.io/wormneuroatlas/

    openworm/wormneuroatlas’s past year of commit activity
    Python 2 GPL-3.0 8 0 0 Updated Oct 22, 2025
View all repositories