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OpenWorm

An open-source project dedicated to creating a virtual C. elegans nematode in a computer.

OpenWorm

An open-source project dedicated to creating a virtual C. elegans nematode in a computer.

An overview of the core repositories in the project, along with the current status of automated testing, can be found here.

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  1. OpenWorm OpenWorm Public

    Repository for the main Dockerfile with the OpenWorm software stack and project-wide issues

    Python 2.9k 220

  2. openworm.github.io openworm.github.io Public

    OpenWorm main website

    HTML 29 35

  3. org.geppetto org.geppetto Public

    Geppetto is an open-source platform to build web-based applications to visualize and simulate neuroscience data and models.

    Python 216 50

  4. c302 c302 Public

    The c302 framework for generating multiscale network models of C. elegans

    Python 124 26

  5. ChannelWorm2 ChannelWorm2 Public

    Tools and curated datasets to build quantitative models of C. elegans ion channels

    Jupyter Notebook 11 2

Repositories

Showing 10 of 107 repositories
  • wormneuroatlas Public Forked from francescorandi/wormneuroatlas

    Neural signal propagation atlas (Randi et al.), genome (WormBase), single-cell transcriptome (Taylor et al.), neuropeptide/GPCR deorphanization (Beets et al.), monoaminergic connectome (Bentley et al.), and chemical-synapse sign predictions (Fenyves et al.) all in one place. Read the docs: https://francescorandi.github.io/wormneuroatlas/

    openworm/wormneuroatlas’s past year of commit activity
    Python 2 GPL-3.0 8 0 0 Updated Aug 26, 2025
  • ConnectomeToolbox Public

    Information on published connectomics data related to C. elegans

    openworm/ConnectomeToolbox’s past year of commit activity
    Python 2 MIT 5 3 1 Updated Aug 21, 2025
  • CE_locomotion Public Forked from edizquierdo/CE_locomotion

    Neuromechanical model of locomotion in C. elegans, originally developed by Eduardo Izquerdo, Erick Olivares and Randall Beer

    openworm/CE_locomotion’s past year of commit activity
    C++ 2 5 7 2 Updated Aug 20, 2025
  • openworm.ai Public

    Scripts related to use of LLMs and other AI technology in OpenWorm

    openworm/openworm.ai’s past year of commit activity
    HTML 1 MIT 0 1 0 Updated Aug 19, 2025
  • sibernetic Public

    This is a C++/OpenCL implementation of the PCISPH algorithm supplemented with a set of biomechanics related features applied to C. elegans locomotion

    openworm/sibernetic’s past year of commit activity
    C 380 108 27 12 Updated Aug 12, 2025
  • OpenWorm Public

    Repository for the main Dockerfile with the OpenWorm software stack and project-wide issues

    openworm/OpenWorm’s past year of commit activity
    Python 2,887 MIT 220 41 3 Updated Aug 8, 2025
  • CelegansNeuromechanicalGaitModulation Public Forked from OpenSourceBrain/CelegansNeuromechanicalGaitModulation

    C elegans Neuromechanical Gait Modulation Model

    openworm/CelegansNeuromechanicalGaitModulation’s past year of commit activity
    C 1 7 0 0 Updated Aug 1, 2025
  • Worm3DViewer Public

    Test repository for multiple views of the worm in 3D

    openworm/Worm3DViewer’s past year of commit activity
    Python 0 0 0 0 Updated Jul 30, 2025
  • c302 Public

    The c302 framework for generating multiscale network models of C. elegans

    openworm/c302’s past year of commit activity
    Python 124 MIT 26 8 (1 issue needs help) 1 Updated Jul 30, 2025
  • Blender2NeuroML Public

    Conversion script to bring neuron models created in Blender into NeuroML format

    openworm/Blender2NeuroML’s past year of commit activity
    Python 18 MIT 6 2 0 Updated Jul 25, 2025