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I added the local.config which enables pushing results to our GCS bucket. I also increased memory for Sratools-prefetch to 200 GB.

You can include the local.config file in your nextflow/fetchngs run with the following command:

nextflow run nf-core/fetchngs -profile docker --input .csv --download_method sratools -c local.config

drpatelh and others added 2 commits February 29, 2024 16:11
Dev -> Master for v1.12.0 release
…also increased memory for Sratools-prefetch.
@norapluto norapluto closed this Aug 18, 2025
@norapluto
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Apologies - we forked without deleting origin so accidentally pushed here. Closing PR.

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2 participants