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Pull requests: nextstrain/nextclade

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Pull requests list

fix(cli): allow --output-annotation-gff and --output-annotation-tbl as sole args
#1708 opened Dec 3, 2025 by ivan-aksamentov Loading…
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chore(deps): bump actions/checkout from 5 to 6 dependencies Pull requests that update a dependency file github_actions Pull requests that update GitHub Actions code
#1706 opened Nov 24, 2025 by dependabot bot Loading…
chore(deps): bump auspice from 2.59.1 to 2.67.0 in /packages/nextclade-web dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#1704 opened Nov 3, 2025 by dependabot bot Loading…
feat: add "recombinant" qc metric
#1700 opened Oct 17, 2025 by ivan-aksamentov • Draft
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5
perf(sort): use lookup table to speed up sequence conversion to bitpacked representation
#1649 opened Jun 9, 2025 by corneliusroemer Loading…
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chore: switch off LTO for profiling profile
#1648 opened Jun 9, 2025 by corneliusroemer Loading…
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Upgrade Rust version
#1604 opened Apr 27, 2025 by corneliusroemer Loading…
13
Adjust Nextclade to Auspice 2.61+
#1555 opened Nov 20, 2024 by ivan-aksamentov • Draft
5
feat(cli): add "sort-and-run" subcommand
#1439 opened Apr 18, 2024 by ivan-aksamentov • Draft
1
feat: add dataset info to output json [wip]
#1311 opened Nov 3, 2023 by ivan-aksamentov • Draft
1
feat(web): handle rust panics in wasm module gracefully [wip]
#1310 opened Nov 3, 2023 by ivan-aksamentov • Draft
1
Add dataset images
#1262 opened Sep 28, 2023 by ivan-aksamentov • Draft
1
feat: Reduce kmer spacing for short sequences
#1242 opened Aug 30, 2023 by corneliusroemer Loading…
1
feat/better seed debug logging
#1240 opened Aug 30, 2023 by corneliusroemer Loading…
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feat: add detailed version information
#1202 opened Jul 17, 2023 by ivan-aksamentov Loading…
3
refactor: inline pieces of bio-rust crate related to FM-index
#1194 opened Jul 10, 2023 by ivan-aksamentov • Draft
1
feat: calculate composite fitness
#1008 opened Oct 3, 2022 by ivan-aksamentov • Draft
2
feat: add secondary clade-like values
#985 opened Sep 5, 2022 by ivan-aksamentov Loading…
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perf(web): performance tweaks
#972 opened Aug 28, 2022 by ivan-aksamentov • Draft
3
feat: sticky tooltips
#749 opened Mar 10, 2022 by ivan-aksamentov • Draft
1
1
Add sequence view pan and zoom
#295 opened Jan 11, 2021 by ivan-aksamentov • Draft
2 of 7 tasks
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