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funannotate v1.8.1

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@nextgenusfs nextgenusfs released this 28 Sep 02:18
· 329 commits to master since this release
v1.8.1
d5c4f2d
  • highly recommend all users upgrade
  • Code now python 2/3 compatible (only 9 months late....)
  • EVM now uses interlap for slicing input files, significant speed increase for larger genomes
  • if --organism other is passed, codingquarry is now disabled by default -- you can turn it on by specifying a valid weight, ie --weights codingquarry:2
  • support for signalp version 5
  • move resources to JSON download via GitHub, will allow for updating/changing resources without re-installing a new version of funannotate
  • several fixes for more robust GFF3 parsing
  • fix for cazyme assignments where results were duplicated; also upgraded to database version 8
  • fix bug where PASA results not properly passed to EVM if funannotate predict was re-run
  • many other bug fixes
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