FionaDocs

FIONA (Flash-based Input/Output Network Appliance) - A secure research data gateway for medical imaging. Provides DICOM anonymization, quarantine management, and automated transfer from clinical to research PACS systems while ensuring GDPR compliance.

Sphinx

1. Installation
2. Check the installed sphinx verskon:

sphinx-build --version

3. Folder structure:

FionaDocs/
└── docs/
    ├── build/          # Generated documentation output
    ├── source/         # Source files for documentation
    │   ├── conf.py     # Sphinx configuration file
    │   └── index.rst   # Main documentation file
    ├── make.bat        # Windows batch file for building
    └── Makefile        # Unix makefile for building

4. Build the HTML documentation

   cd docs
   make html
   

5. Generate PDF documentation

   cd docs
   make latex
   

6. Generate PDF from LaTeX

cd build/latex
pdflatex fionadocs.tex