Proposal to Include Working cmprsk.crr Learner in mlr3cmprsk

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: mlr3extralearners
 Title: Extra Learners For mlr3
-Version: 1.1.0.9000
+Version: 1.1.0.9001
 Authors@R: c(
     person("Raphael", "Sonabend", , "[email protected]", role = "aut",
            comment = c(ORCID = "0000-0001-9225-4654")),
@@ -27,7 +27,9 @@ Authors@R: c(
     person("Baisu", "Zhou", , "[email protected]", role = "ctb"),
     person("Marc", "Becker", , "[email protected]", role = "ctb",
            comment = c(ORCID = "0000-0002-8115-0400")),
-    person("Nikolai", "German", , "[email protected]", role = "ctb")
+    person("Nikolai", "German", , "[email protected]", role = "ctb"),
+    person("Andrzej", "Galecki", email = "[email protected]", role = "ctb",
+           comment = c(ORCID = "0000-0003-1542-4001"))
   )
 Description: Extra learners for use in mlr3.
 License: LGPL-3
@@ -62,6 +64,7 @@ Suggests:
     callr,
     catboost,
     class,
+    cmprsk (>= 2.2-11),
     coin,
     CoxBoost,
     crs,
@@ -119,6 +122,7 @@ Suggests:
     rFerns,
     riskRegression,
     rJava,
+    rlang,
     rmarkdown,
     rotationForest,
     rpart,

NAMESPACE

@@ -77,6 +77,7 @@ export(LearnerClassifSimpleLogistic)
 export(LearnerClassifStepPlr)
 export(LearnerClassifTabPFN)
 export(LearnerClassifVotedPerceptron)
+export(LearnerCompRisksFineGrayCRR)
 export(LearnerCompRisksRandomForestSRC)
 export(LearnerDensKDEks)
 export(LearnerDensLocfit)

R/bibentries.R

@@ -1,4 +1,15 @@
 bibentries = c( # nolint start
+
+  finegray1999crr = bibentry("article",
+    author = "Fine, Jason P. and Gray, Robert J.",
+    title = "A proportional hazards model for the subdistribution of a competing risk",
+    journal = "Journal of the American Statistical Association",
+    volume = 94,
+    number = 446,
+    year = 1999,
+    pages = "496--509"
+  ),
+
   breiman_2001 = bibentry("article",
     title       = "Random Forests",
     author      = "Breiman, Leo",
@@ -812,30 +823,6 @@ bibentries = c( # nolint start
     booktitle = "International Conference on Learning Representations 2023",
     year = "2023"
   ),
-  adabag2013 = bibentry("article",
-    title = "adabag: An R Package for Classification with Boosting and Bagging",
-    volume = "54",
-    url = "https://www.jstatsoft.org/index.php/jss/article/view/v054i02",
-    doi = "10.18637/jss.v054.i02",
-    number = "2",
-    journal = "Journal of Statistical Software",
-    author = "Alfaro, Esteban and Gamez, Matias and Garc\xc3\xada, Noelia",
-    year = "2013",
-    pages = "1-35"
-  ),
-  park2008plr = bibentry("article",
-    title = "Penalized logistic regression for detecting gene interactions",
-    author = "Park, Mee Young and Hastie, Trevor",
-    journal = "Biostatistics",
-    volume = "9",
-    number = "1",
-    pages = "30-50",
-    year = "2007",
-    month = "04",
-    issn = "1465-4644",
-    doi = "10.1093/biostatistics/kxm010",
-    url = "https://doi.org/10.1093/biostatistics/kxm010"
-),
   knn2002 = bibentry("book",
     title = "Modern Applied Statistics with S",
     author = "W. N. Venables and B. D. Ripley",
@@ -867,35 +854,5 @@ bibentries = c( # nolint start
     pages = "757--773",
     doi = "10.1093/BIOSTATISTICS/KXU010",
     URL = "https://doi.org/10.1093/BIOSTATISTICS/KXU010"
-  ),
-  rodriguez2006rf = bibentry("article",
-    author="Rodriguez, J.J. and Kuncheva, L.I. and Alonso, C.J.",
-    journal="IEEE Transactions on Pattern Analysis and Machine Intelligence",
-    title="Rotation Forest: A New Classifier Ensemble Method",
-    year="2006",
-    volume="28",
-    number="10",
-    pages="1619-1630",
-    doi="10.1109/TPAMI.2006.211"
-  ),
-  ozuyal2010rferns = bibentry("article",
-    author = "Ozuysal, Mustafa and Calonder, Michael and Lepetit, Vincent and Fua, Pascal",
-    journal = "IEEE Transactions on Pattern Analysis and Machine Intelligence",
-    title = "Fast Keypoint Recognition Using Random Ferns",
-    year = "2010",
-    volume = "32",
-    number = "3",
-    pages = "448-461",
-    doi = "10.1109/TPAMI.2009.23"
-  ),
-  kursa2014rferns = bibentry("article",
-    title = "rFerns: An Implementation of the Random Ferns Method for General-Purpose Machine Learning",
-    author = "Miron B. Kursa",
-    journal = "Journal of Statistical Software",
-    year = "2014",
-    volume = "61",
-    number = "10",
-    pages = "1--13",
-    url = "https://www.jstatsoft.org/v61/i10/"
   )
 ) # nolint end