Course Template

This is a template for creating new ML@CL courses using Jekyll, LaMD (Lecture as Markdown), and VibeSafe project management tools.

Quick Start

1. Copy the Template

# From the parent directory (e.g., /Users/neil/mlatcl/)
cp -r course-template/ yourcourse/
cd yourcourse/

2. Customize the Course

Run the customization script to update all placeholders:

./setup-course.sh

This will prompt you for:

• Course code (e.g., mlfc, advds, mlphysical)
• Course title (e.g., "Machine Learning Foundations")
• Course description
• Your name and institution
• Course venue

Alternatively, manually replace the following placeholders throughout the template:

• tig - Your course code (e.g., mlfc, advds)
• The Inaccessible Game - Your course full title
• A course about entropy, information geometry and Fisher information - Short course description
• A course about entropy, information geometry and Fisher information - Longer description for home page
• A course about entropy, information geometry and Fisher information - Overview paragraph for home page
• Your Name, Your Institution - Author information

3. Install Dependencies

# Install Ruby gems for Jekyll
bundle install

# Make sure LaMD is installed
# See: https://github.com/lawrennd/lamd

4. Create Your First Lecture

cd _lamd
cp sample-lecture.md 01-01-introduction.md
# Edit 01-01-introduction.md with your content
maketalk 01-01-introduction.md

5. Preview Your Site Locally

bundle exec jekyll serve
# Visit http://localhost:4000/tig/

6. Deploy to GitHub Pages

# Initialize git repository
git init
git add .
git commit -m "Initial course setup"

# Create repository on GitHub (e.g., mlatcl/yourcourse)
git remote add origin https://github.com/mlatcl/yourcourse.git
git push -u origin main

# Enable GitHub Pages in repository settings
# Set source to "main" branch
# Your site will be at: https://mlatcl.github.io/yourcourse/

Directory Structure

course-template/
├── _config.yml              # Jekyll configuration
├── _data/                   # Site data (navigation, etc.)
│   ├── nav.yml             # Navigation menu configuration
│   └── people.yml          # Course instructors/TAs
├── _lamd/                   # Lecture source files (LaMD format)
│   ├── _lamd.yml           # LaMD configuration
│   ├── sample-lecture.md   # Sample lecture
│   └── sample-practical.md # Sample practical
├── _lectures/               # Compiled lecture HTML (generated)
├── _notebooks/              # Compiled Jupyter notebooks (generated)
├── _practicals/             # Compiled practical exercises (generated)
├── _projects/               # Student project descriptions
├── _people/                 # People information
├── slides/                  # Compiled reveal.js slides (generated)
│   └── diagrams/           # Images and diagrams for slides
├── Gemfile                  # Ruby dependencies
├── .gitignore              # Git ignore rules
├── index.html              # Course home page
├── lectures.html           # Lectures index page
├── practicals.html         # Practicals index page
├── projects.html           # Projects index page
├── setup-course.sh         # Customization script
└── README.md               # This file

Creating Course Content

Lectures

Lectures are written in LaMD (Lecture as Markdown) format in the _lamd/ directory.

File naming convention: WW-SS-topic-name.md

• WW = week number (01, 02, etc.)
• SS = session number (01, 02, etc.)

Example: 01-01-introduction.md (Week 1, Session 1)

Compiling lectures:

cd _lamd
maketalk 01-01-introduction.md

This generates:

• HTML lecture page in _lectures/
• Reveal.js slides in slides/
• Jupyter notebook in _notebooks/

Practicals

Practicals follow the same naming convention but include -practical:

• 01-01-introduction-practical.md

LaMD Commands

Common commands in LaMD files:

• \notes{...} - Content for lecture notes (not in slides)
• \slides{...} - Content for slides only
• \subsection{...} - Section heading
• \code{...} - Executable Python code
• \setupcode{...} - Setup code (hidden in output)
• $$...$$ - LaTeX mathematics
• \reading{...} - Reading list

See LaMD documentation for full details.

Configuration Files

_config.yml

Main Jekyll configuration. Key settings:

• title: Course title
• description: Course description
• baseurl: Course URL path (e.g., /mlfc)
• collections: Defines lectures, practicals, projects

_lamd/_lamd.yml

LaMD configuration. Key settings:

• author: Your information
• postsdir, slidesdir, etc.: Output directories
• posts, ipynb, reveal: Enable/disable output formats
• url, baseurl: Website URLs
• venue: Course venue

_data/nav.yml

Navigation menu configuration. Customize the main navigation, footer, and top bar.

VibeSafe Project Management (Optional)

This template can be integrated with VibeSafe for project management:

• Backlog: Task tracking system
• CIPs (Code Improvement Plans): Structured improvements
• AI-Requirements: Requirements gathering framework
• Tenets: Project principles and guidelines

To install VibeSafe tools, see: VibeSafe Documentation

Customization

Changing the Theme

The template uses mlatcl/jekyll-theme. To use a different theme:

1. Update remote_theme in _config.yml
2. Adjust layouts in HTML files if needed

Adding Custom Layouts

Create custom layouts in _layouts/ directory:

---
layout: default
---
{{ content }}

Custom CSS

Add custom styles by creating _sass/custom.scss and including in Jekyll.

Common Tasks

Add a New Lecture

cd _lamd
# Create new file following naming convention
vim 02-01-new-topic.md
# Compile it
maketalk 02-01-new-topic.md

Update Navigation

Edit _data/nav.yml to add/remove menu items.

Add Course Images

Place images in slides/diagrams/ and reference in markdown:

![Description](slides/diagrams/image.svg)

Test Locally

bundle exec jekyll serve --watch
# Visit http://localhost:4000/tig/

Clean Generated Files

# Remove Jekyll build
rm -rf _site

# Remove generated lecture files
rm -rf _lectures/* _notebooks/* slides/*

Troubleshooting

Jekyll won't start

bundle install
bundle update

LaMD compilation errors

Check:

• _lamd.yml configuration
• YAML frontmatter in lecture files
• Python environment for code execution

Slides not showing

• Verify reveal: True in _lamd.yml
• Check that slidesdir path is correct
• Ensure reveal.js is included in theme

Page 404 errors

• Check baseurl in _config.yml matches repository name
• Verify GitHub Pages is enabled in repository settings
• Wait a few minutes for GitHub Pages to build

Resources

• LaMD Documentation: https://inverseprobability.com/lamd
• LaMD GitHub: https://github.com/lawrennd/lamd
• Jekyll Documentation: https://jekyllrb.com/docs/
• GitHub Pages: https://pages.github.com/
• ML@CL Jekyll Theme: https://github.com/mlatcl/jekyll-theme

Example Courses

See these courses for examples:

• ML Foundations: https://github.com/mlatcl/mlfc
• Advanced Data Science: https://github.com/mlatcl/advds
• ML and the Physical World: https://github.com/mlatcl/mlphysical
• Deep Neural Networks: https://github.com/mlatcl/deepnn

Support

For questions or issues:

• Open an issue on the course repository
• Contact ML@CL group: https://mlatcl.github.io/contact-us/

License

This template is provided as-is for creating ML@CL courses. Individual course content is subject to its own licensing.