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Matsen Group

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  1. phippery phippery Public

    Python 19 2

  2. gctree gctree Public

    GCtree: phylogenetic inference of genotype-collapsed trees

    Python 17 2

  3. sumrep sumrep Public

    Summary statistics for repertoires

    R 17 6

  4. vampire vampire Public

    🧛 Deep generative models for TCR sequences 🧛

    Python 17 4

  5. olmsted olmsted Public

    B-cell repertoire and clonal family tree explorer

    JavaScript 16 5

  6. phip-flow phip-flow Public

    A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets

    Python 13 8

Repositories

Showing 10 of 129 repositories
  • netam Public

    Neural networks to model BCR affinity maturation

    matsengrp/netam’s past year of commit activity
    Python 3 MIT 0 9 1 Updated Nov 3, 2025
  • olmsted Public

    B-cell repertoire and clonal family tree explorer

    matsengrp/olmsted’s past year of commit activity
    JavaScript 16 AGPL-3.0 5 61 1 Updated Nov 3, 2025
  • larch Public

    Inference and manipulation of history DAGs

    matsengrp/larch’s past year of commit activity
    C++ 2 MIT 2 18 3 Updated Oct 29, 2025
  • epam Public

    Evaluating predictions of affinity maturation

    matsengrp/epam’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Oct 27, 2025
  • plugins Public

    Claude Code plugin with specialized agents for scientific writing, code review, and technical documentation

    matsengrp/plugins’s past year of commit activity
    1 0 0 0 Updated Oct 24, 2025
  • SARS2-mut-fitness-v2 Public Forked from neherlab/SARS2-mut-fitness-v2

    Repository for computing fitness effects of nucletoide and amino acid mutations based on accurate neutral rates.

    matsengrp/SARS2-mut-fitness-v2’s past year of commit activity
    Jupyter Notebook 0 MIT 2 0 0 Updated Oct 23, 2025
  • ola-encoding Public
    matsengrp/ola-encoding’s past year of commit activity
    Python 1 0 0 0 Updated Oct 21, 2025
  • usher Public Forked from yatisht/usher

    Ultrafast Sample Placement on Existing Trees

    matsengrp/usher’s past year of commit activity
    C++ 0 MIT 47 1 0 Updated Oct 21, 2025
  • fully-heterochronous-f-matrix Public

    F-matrix representation and sampling for ranked tree shapes

    matsengrp/fully-heterochronous-f-matrix’s past year of commit activity
    R 0 0 0 0 Updated Oct 21, 2025
  • multidms Public

    Joint modeling of multiple deep mutational scanning experiments

    matsengrp/multidms’s past year of commit activity
    Jupyter Notebook 1 MIT 0 13 1 Updated Oct 16, 2025
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