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@marbl

MarBL

Maryland Bioinformatics Labs

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  1. CHM13 CHM13 Public

    The complete sequence of a human genome

    955 99

  2. canu canu Public

    A single molecule sequence assembler for genomes large and small.

    C++ 674 179

  3. Krona Krona Public

    Interactively explore metagenomes and more from a web browser.

    JavaScript 471 105

  4. Mash Mash Public

    Fast genome and metagenome distance estimation using MinHash

    C++ 406 93

  5. verkko verkko Public

    Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and Oxford Nanopore ultra-long reads.

    Python 334 31

  6. merqury merqury Public

    k-mer based assembly evaluation

    Shell 309 20

Repositories

Showing 10 of 39 repositories
  • verkko Public

    Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and Oxford Nanopore ultra-long reads.

    marbl/verkko’s past year of commit activity
    Python 334 31 24 0 Updated May 5, 2025
  • parsnp Public

    Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output includes variant (SNP) calls, core genome phylogeny and multi-alignments. Parsnp leverages contextual information provided by multi-alignments surroundin…

    marbl/parsnp’s past year of commit activity
    C++ 139 27 27 0 Updated Apr 29, 2025
  • canu Public

    A single molecule sequence assembler for genomes large and small.

    marbl/canu’s past year of commit activity
    C++ 674 179 4 2 Updated Apr 25, 2025
  • training Public

    Genome Assembly 102

    marbl/training’s past year of commit activity
    Shell 14 2 0 0 Updated Apr 23, 2025
  • ModDotPlot Public
    marbl/ModDotPlot’s past year of commit activity
    Python 145 MIT 11 9 1 Updated Apr 17, 2025
  • anianns Public

    ANI based satellite annotation

    marbl/anianns’s past year of commit activity
    Python 7 0 1 0 Updated Apr 17, 2025
  • Primates Public

    Complete assemblies of non-human primate genomes

    marbl/Primates’s past year of commit activity
    48 4 1 0 Updated Apr 15, 2025
  • T2T-Browser Public

    Genome browser hub for the T2T genomes and resources

    marbl/T2T-Browser’s past year of commit activity
    HTML 21 3 0 0 Updated Apr 7, 2025
  • HG002-issues Public

    HG002 human reference genome issue tracking and polishing

    marbl/HG002-issues’s past year of commit activity
    10 0 23 0 Updated Feb 24, 2025
  • meryl Public

    A genomic k-mer counter (and sequence utility) with nice features.

    marbl/meryl’s past year of commit activity
    C 136 14 36 0 Updated Feb 24, 2025