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1. PepMimic PepMimic Public

   Official repository for the paper "Peptide design through binding interface mimicry with PepMimic" accepted by Nature Biomedical Engineering

   Python 18 2

2. UniMoMo UniMoMo Public

   Codes for our paper "UniMoMo: Unified Generative Modeling of 3D Molecules for De Novo Binder Design" (ICML 2025)

   Python 72 11

3. THUNLP-MT/dyMEAN THUNLP-MT/dyMEAN Public

   This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"

   Python 121 17

4. THUNLP-MT/MEAN THUNLP-MT/MEAN Public

   This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.

   Python 100 18

5. THUNLP-MT/PS-VAE THUNLP-MT/PS-VAE Public

   This repo contains the codes for our paper: Molecule Generation by Principal Subgraph Mining and Assembling.

   Python 43 9

6. THUNLP-MT/PepGLAD THUNLP-MT/PepGLAD Public

   Codes for our paper "Full-Atom Peptide Design with Geometric Latent Diffusion" (NeurIPS 2024)

   Python 97 10