BioinformaticsContainers

Containers built for packaging bioinformatics software Used to Assist researchers and the University of Sydney in Bioinformatics High Performance Computing workflows.

Amongst other packages and dependencies, The Software includes:

GTAK

https://software.broadinstitute.org/gatk/download/

Samtools

http://www.htslib.org/

Fastp

https://github.com/OpenGene/fastp

BWA

https://github.com/lh3/bwa

Sambaba

https://lomereiter.github.io/sambamba/

Samblaster

https://github.com/GregoryFaust/samblaster/releases/download/v.0.1.24/samblaster-v.0.1.24.tar.gz

Tabix

https://github.com/samtools/tabix.git