This is the repository containing the analysis of ERVK-7 (HML2_1q22) for lung adenocaricnoma

Folders

GTF folder: GTF used for featureCounts quantification and full ERVK-7 transcripts. All of the coordinates are in Hg38

1. Brie_ERVK-7.gtf: GTF file used for Brie
2. ERVK-7_full_transcripts.gtf: GTF file containing coordinates for ERVK-7.long and ERVK-7.short
3. Quantification: GTF file for quantification for featureCounts

Main figures code folder: Code used to generate all the main figures in R studio.