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ENH: Add windows support#184

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rmcar17 wants to merge 45 commits intomainiqtree/piqtree:mainfrom

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Commits on Mar 19, 2025

• Bump iqtree2 from `1320c4c` to `39cbee5`

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Commits on Mar 20, 2025

• DEV: ignore dll files

  rmcar17

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• DEV: update libiqtree function signatures and add custom type convertors for structs

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• DEV: ensure DLLs are included in build on windows

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• BUG: on windows, change out of tmp directory before cleaning up

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• TST: skip tests which throw error on IQ-TREE side on windows

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• ENH: include cstddef for other platforms

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• MAINT: ignore attr-defined typing error for non-windows

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• DEV: add windows build scripts

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• DEV: build windows when building iqtree and cache correct files.

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• DEV: test build process on windows

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• DEV: install boost through action on windows, remove non-available choco packages

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• DEV: set boost env variables

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• DEV: debug boost env vars

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• DEV: removed path debugs, manually specify boost dirs

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• DEV: manually specify toolchain, downgrade llvm

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• DEV: add lib.exe to path

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• DEV: debug msvc path

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• DEV: try running wswhere through cmd

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• DEV: try configuring MSVC

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• DEV: use cmd to setup VS env

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• DEV: use action to setup msvc

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• DEV: continue build process with found lib

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• DEV: only brew install on mac

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• DEV: use different caches on unix/windows

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• DEV: Install llvm when testing windows ci, make build_iqtree compatible on local windows

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• DEV: re-enable full CI matrix

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• DEV: use runner.os for choosing before_all script

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• DEV: standardise cache names

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• DEV: use correct input for cache key

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• DEV: add windows to cibuildwheel

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• DEV: run before_all_windows script with bash

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• DEV: debug BOOST env vars

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• DEV: attempt hardcoding boost paths

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• DEV: fix BOOST lib path

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• DEV: remove hardcoding of BOOST paths

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• DEV: hardcode paths again

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• DEV: normalise slashes in before_all_windows

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• MAINT: remove extra space

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• MAINT: update python version (#4)

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• Merge branch 'main' into windows-support

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Commits on Mar 23, 2025

• DEV: update iqtree to error handling version

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• DEV: update return/arg types for calling IQ-TREE

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• DEV: remove pytest skips on windows

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Commits on May 12, 2025

• DEV: rebase windows-support on main (#5)

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