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modified ometiff_second_stitching.cwl and run_cytokit.cwl in steps folder #51

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modified ometiff_second_stitching.cwl and run_cytokit.cwl in steps folder #51

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7 changes: 4 additions & 3 deletions steps/ometiff_second_stitching.cwl
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Original file line number Diff line number Diff line change
Expand Up @@ -36,9 +36,10 @@ steps:
cytokit_config:
source: cytokit_config
num_concurrent_tasks:
type: int
inputBinding:
prefix: "--num_concurrent_tasks"
# type: int
# inputBinding:
# prefix: "--num_concurrent_tasks"
source: num_concurrent_tasks
out:
- bg_sub_tiles
- bg_sub_config
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2 changes: 1 addition & 1 deletion steps/run_cytokit.cwl
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Expand Up @@ -7,7 +7,7 @@ baseCommand: ["sh", "run_cytokit.sh"]
requirements:
DockerRequirement:
dockerPull: hubmap/cytokit:latest
DockerGpuRequirement: {}
#DockerGpuRequirement: {}

InitialWorkDirRequirement:
listing:
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