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@hms-dbmi

Harvard Medical School - Department of Biomedical Informatics

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  1. UpSetR UpSetR Public

    An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..

    R 789 159

  2. scde scde Public

    R package for analyzing single-cell RNA-seq data

    R 174 66

  3. viv viv Public

    Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.

    JavaScript 303 49

Repositories

Showing 10 of 375 repositories
  • gehlenborglab-website Public

    Code for Gehlenborg Lab website.

    hms-dbmi/gehlenborglab-website’s past year of commit activity
    TypeScript 9 MIT 38 13 1 Updated Apr 19, 2025
  • udi-grammar Public

    The Universal Discovery Interface Grammar.

    hms-dbmi/udi-grammar’s past year of commit activity
    TypeScript 2 MIT 1 0 4 Updated Apr 18, 2025
  • ETL-MissionControl-dbgap-submodule Public

    ETL-MissionControl-dbgap-submodule

    hms-dbmi/ETL-MissionControl-dbgap-submodule’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Apr 18, 2025
  • pic-sure-baseline-release-control Public
    hms-dbmi/pic-sure-baseline-release-control’s past year of commit activity
    0 5 0 0 Updated Apr 18, 2025
  • i2b2v2-webclient Public
    hms-dbmi/i2b2v2-webclient’s past year of commit activity
    JavaScript 2 4 1 2 Updated Apr 18, 2025
  • picsure-dictionary-etl Public
    hms-dbmi/picsure-dictionary-etl’s past year of commit activity
    Java 0 Apache-2.0 0 0 0 Updated Apr 18, 2025
  • PIC-SURE-Frontend Public

    A frontend for the PIC-SURE API

    hms-dbmi/PIC-SURE-Frontend’s past year of commit activity
    TypeScript 1 Apache-2.0 0 0 10 Updated Apr 18, 2025
  • pic-sure-hpds Public
    hms-dbmi/pic-sure-hpds’s past year of commit activity
    Java 3 Apache-2.0 6 0 1 Updated Apr 18, 2025
  • udi-training-data Public

    code for generating training data used for fine-tuning the LLM

    hms-dbmi/udi-training-data’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Apr 17, 2025
  • pic-sure-all-in-one Public
    hms-dbmi/pic-sure-all-in-one’s past year of commit activity
    Shell 4 Apache-2.0 12 0 2 Updated Apr 17, 2025
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