Source updates and fixes

[kkaris]

This PR combines updates made to source modules with more general updates to the package that were made in connection with the latest database deployment.

Source updates

• bgee: Update to version 15.2
• Clinicaltrials: Switch to using trialsynth instead of the now shut down old rest API
• Depmap: The module is expanded to include download and initial processing of data
• GO: Update GO-annotations URL
• Gwas: add NaN check
• indra db:
  • Add missing parameter in CLI function
  • Update export_assembly with better formatting and add a force option for data processing
• NIH-reporter:
  • Update utc datetime usage
  • Fix bug in how to present the patent ID
• pubmed: use text refs S3 resource instead of dumping new file
• wikidata: add option to skip citescore data if missing

Other updates

• Reduce number of worker for web app to 2
• Add trialsynth and tqdm as required packages for assembly
• Update downtime page with better text
• Add dump_norm_id as a wrapper around norm_id to be used specifically in the dumping process
• source/cli.py:
  • Add force import option for neo4j admin import
  • Add functions for future refactoring of node assembly
• Update clinicaltrials test
• Add two new checks in data validation:
  • Check for newlines in text fields
  • Check for NaN/inf in numerical fields
• Update data validation tests

Associated PRs

• Package fixes depmap_analysis#69
• Updates trialsynth#17

[kkaris]

The last two commits, 83c01ef and a7961f1, reverts the branch installs of depmap_analysis and trialsynth, which makes the tests fail, but they should pass again once gyorilab/depmap_analysis#69 and gyorilab/trialsynth#17 are merged.