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@gitter-lab

Gitter Lab

Computational biology research group at UW-Madison and the Morgridge Institute

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  1. nn4dms nn4dms Public

    Neural networks for deep mutational scanning data

    Jupyter Notebook 68 18

  2. metl metl Public

    Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models

    Python 36 6

  3. LPWC LPWC Public

    Lag Penalized Weighted Correlation for Time Series Clustering

    R 21 3

  4. metl-sim metl-sim Public

    High-throughput framework for running molecular simulations for METL

    Python 17 5

  5. ssps ssps Public

    Sparse Signaling Pathway Sampling: MCMC for signaling pathway inference

    Julia 14

  6. metl-pretrained metl-pretrained Public

    Pretrained METL models with minimal dependencies

    Python 14

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