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Update opt.py #100

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Update opt.py #100

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4 changes: 4 additions & 0 deletions opt.py
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Expand Up @@ -3,10 +3,14 @@
from vaccine.load import dat as vaccine
from corona import corona

# Replace thymine (T) with uracil (U) in virus sequence
virus = virus.replace("T", "U")

# Replace pseudouridine (Ψ) with uracil (U) in vaccine sequence
vaccine = vaccine.replace("Ψ", "U")

"""
# Find the start position of the vaccine sequence in the virus sequence
for i in range(len(virus)-len(vaccine)):
mm = virus[i:i+len(vaccine)]
mr = sum([c1 == c2 for c1,c2 in zip(mm, vaccine)]) / len(vaccine)
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