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Extract two mini tutorials from larger ones for EGA, SRA data fetching #3964

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hexylena
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@shiltemann what do you reckon

@@ -239,16 +239,16 @@ First we need to find a good dataset to play with. The [Sequence Read Archive (S
>
> 1. Go to NCBI's SRA page by pointing your browser to https://www.ncbi.nlm.nih.gov/sra
> 2. In the search box enter `SARS-CoV-2 Patient Sequencing From Partners / MGH`:
> ![Find data](../../../images/find_mgh_data.png) (Alternatively, you [simply access the data via link](https://www.ncbi.nlm.nih.gov/sra/?term=SARS-CoV-2+Patient+Sequencing+From+Partners+%2F+MGH))
> ![Find data]({% link ../../images/find_mgh_data.png %}) (Alternatively, you [simply access the data via link](https://www.ncbi.nlm.nih.gov/sra/?term=SARS-CoV-2+Patient+Sequencing+From+Partners+%2F+MGH))
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🚫 [rdjsonl] <GTN:018> reported by reviewdog 🐶
The linked file (../../images/find_mgh_data.png) could not be found.


> <hands-on-title>Download listed VCFs</hands-on-title>
>
> 1. {% tool [EGA Download Client](toolshed.g2.bx.psu.edu/repos/iuc/ega_download_client/pyega3/4.0.0+galaxy0) %} with the following parameters:
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@wm75 wm75 Mar 24, 2023

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You may want to use the latest tool version from #3958 already.

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> 1. {% tool [EGA Download Client](toolshed.g2.bx.psu.edu/repos/iuc/ega_download_client/pyega3/4.0.0+galaxy0) %} with the following parameters:
> 1. {% tool [EGA Download Client](toolshed.g2.bx.psu.edu/repos/iuc/ega_download_client/pyega3/4.0.5+galaxy2) %} with the following parameters:

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I think I will combine them into a olympics-style "data sources" tutorial, where we can show users how to import data from various data sources into Galaxy in a set of standalone sections

@shiltemann shiltemann self-assigned this Mar 24, 2023
@hexylena hexylena marked this pull request as draft March 24, 2023 11:36
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3 participants