create_files_for_hogs :: not installed by setpu.py

[EricDeveaud]

Hello,

while installing version 2.5.4 from release tag tarball I noticed that the tools/create_files_for_hogs.py script is not installed

is this expected.

regards

Eric

[davidemms]

Hi Eric

Thanks for letting me know. No, that wasn't intended, I'll make sure it's included in all future releases.

Best wishes
David

[davidemms]

Just to add, you can get them from the current source code release: https://github.com/davidemms/OrthoFinder/releases/download/2.5.4/OrthoFinder_source.tar.gz

[Matt-BF]

Hi! Stumbled on this thread. I am having difficulty running the create_files_for_hogs from a conda installation. Maybe I am missing something but I can't find it on the conda environment.

I suspect that its because there is no entry point for the script, maybe the solution would be to add it on the setup.py. I'd be happy to do the PR if that is really the issue!

EDIT: PR submitted #853

        'console_scripts': [
            'orthofinder=scripts_of.__main__:main',
            'primary_transcript=tools.primary_transcript:main',
            'make_ultrametric=tools.make_ultrametric:main',
            'convert_orthofinder_tree_ids=tools.convert_orthofinder_tree_ids:main',
            'create_files_for_hogs=tools.create_files_for_hogs:main'
        ],
    },