Add napari backend pyside2 to environment.yml

.github/workflows/continuous-integration.yml

@@ -30,7 +30,7 @@ jobs:
         python-version: ${{ matrix.python-version }}
     - name: Install dependencies
       run: |
-        sudo apt-get install --no-install-recommends libyaml-dev libegl1-mesa libxkbcommon-x11-0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-randr0 libxcb-render-util0 libxcb-xinerama0 libxcb-shape0 libxcb-cursor0 xserver-xephyr
+        sudo apt-get install --no-install-recommends libyaml-dev libxkbcommon-x11-0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-randr0 libxcb-render-util0 libxcb-xinerama0 libxcb-shape0 libxcb-cursor0 xserver-xephyr
         python -m pip install --upgrade pip
         pip install flake8 pytest pytest-cov pytest-qt pytest-xvfb ipython anyio
     - name: Lint with flake8

environment.yml

@@ -27,6 +27,7 @@ dependencies:
   - napari
   - pyqt
   - pytest-qt
+  - pyside2
 
 channels:
   - conda-forge

plantcv/annotate/napari_label_classes.py

@@ -82,7 +82,7 @@ def napari_label_classes(img, classes=False, size=10,
         for x in classes:
             if x not in keys:
                 viewer.add_points(np.array([]), name=x, symbol='square',
-                                  edge_color=random.choice(color),
+                                  border_color=random.choice(color),
                                   face_color=random.choice(color), size=size)
         keys = napari_classes(viewer)
 
@@ -95,7 +95,7 @@ def napari_label_classes(img, classes=False, size=10,
                 else:
                     viewer.add_points(importdata[key], name=key,
                                       symbol='square',
-                                      edge_color=random.choice(color),
+                                      border_color=random.choice(color),
                                       face_color=random.choice(color),
                                       size=size)
 

pyproject.toml

@@ -10,9 +10,10 @@ name = "plantcv-annotate"
 dynamic = ["version"]
 dependencies = [
     "plantcv",
-    "matplotlib",
     "napari",
-    "PyQt5"
+    "PyQt5",
+    "PySide6"
+
 ]
 requires-python = ">=3.6"
 authors = [