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1. Bitbol-Lab/ProtMamba-ssm Bitbol-Lab/ProtMamba-ssm Public

   ProtMamba: a homology-aware but alignment-free protein state space model

   Jupyter Notebook 80 11

2. Bitbol-Lab/DiffPALM Bitbol-Lab/DiffPALM Public

   Differentiable Pairing using Alignment-based Language Models

   Jupyter Notebook 24 3

3. Bitbol-Lab/Iterative_masking Bitbol-Lab/Iterative_masking Public

   Iterative masking algorithm on MSA Transformer to generate synthetic sequences

   Jupyter Notebook 28 8

4. Bitbol-Lab/rag-esm Bitbol-Lab/rag-esm Public

   RAG-ESM is a retrieval-augmented framework that allows to condition pretrained ESM2 protein language models on homologous sequences

   Python 25 1