To use this notebook

1. Go to ood.ccv.brown.edu (you will need an Oscar account).
2. Go to 'Clusters' in the blue menu bar at the top and click the drop-down that says '>_OSCAR Shell Access'
3. Go to your home folder and type git clone https://github.com/compbiocore/intro_scrna_dscov.git
4. Look under Interactive Apps in the blue menu bar and click on RStudio on Singularity under Expert GUIs. Fill in the fields as follows:

• Account: (leave blank)
• Partition: (leave blank)
• Number of hours: 2
• Num Cores: 1
• Memory: 100
• Singularity Container Path : /oscar/data/shared/databases/workshops/dscov/intro_scrna_dscov/metadata/intro_scrna_dscov.sif
• Path for rsession executable: (leave blank)
• Package install Path: (leave blank)
• R Module: (leave blank)
• Additional Data Path: (leave blank)

5. Once your job starts, click the button to connect to session.
6. At the top of the screen you'll see a menu bar that starts with 'file', click on 'file' and 'open file'.
7. Go to your home folder where you have cloned this repository and open up notebooks/Intro.qmd